Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst2g02682 | ATGACTTCGTCGGCGTGGTTGCCGCAGGAGGCGCAGCCACATGTGTCCGGAGAAAAGTCTCTTCCTATGGCTTCTTCCACCTCTAGTTCCGCTACTGCTACTCCTTCCACCGGTAAACCTACTACACCTTTACGCTTTCGATTCATCGGATCTCCGGCATCAGCACCGGCACCTCCATTCCCTTACGGCGTGCTTCAGTATGCCAACACTTCGGGGAGTTCTCAACAGTCATCGACAAATAATGCGCTTGTTCTTACCCTCTACTCTGTTGTTTCTGGTGTCTCGTCGCATTCTGCTCCTTCATTTTCGTACAATATTCCCCAGAGTGGTGCCGCTTTTTCCAGCAACCAGCAGCATACTCAATCTAGCTCTGTAAGGCCTTTACCGGAAATTTGTGAAGATCACTTGACACTTGATCAGTTTGACAACAATATGGGACAGTTGAAAGTGGTGGAGTGCTACTCCTTTATTCCCTTCTACCATGAAACTGAATCGAAAAATGTATCGGATTCTGTTGCACAGGATGTTACTAAATTGTCATCTGTGTCAAGTATCCCTCATTCTGCTCATACATCTACATCGATAATGCCTCCCTCTGACCCTAATTATCTTCCAAGTACTTCATGGATGCCCACTGCAATGTCTTTTCCCTTGCATCCTGTAATGCCTACTCCAGGAAATCCTGGCCCTCCTGGATTAGCATCATCTTCGGTAGTGTCCATCAATCCTGCTGTTCCATCCACTGGAATAGATTCTTCCTCAGCTGCCTTACTGAGACCAAACATGCCAATTTCAGCCATTGCATCAGATCCTACTACCCCTCATAAAGGTTTACCCTATCCATCCATGCCTTCAATGGCTGCTCCCCCTCAGGGATTTTGGGTACAACCCCCACATTTGAGTGGTGTCTTTAGGCCACCGTATCTTCAATACCCTGCTCCTTTTCCTGTCTCCTTTCCATTTCCAGCACGCAGTGTTACTCTTCCTGCTGTTCCAATACCTGATTCTCAACCTCCCGGTGTTACACCTGTGAGTGGTGGTGGTGGCACTTCTACACCTGCTTCCAGCAATCATCTGAGGGGAACAATGGCTTCGCAAACTGAAGTTATTTCAGGGCCAGCTGATGATAATAAGAAATTAAATGCTGTCATCACCCAACATGAGGATGCTGCTAATAATGAACAATTAGAGGCCTGGACAGCCCACAAGACTGAAGCAGGAATTATATACTATTACAATGCCGTGACTGGAGTATCAACATATGATAAACCTTCTGGATTTAAAGGGGAGGGTATTATGAGATTCTTTGTTCACGGGATGGACTTGCCTGGTACTGATTGGCTGTTGGTCTCTACTAGTGATGGGAAAAAATATTACTACAATAATCGAACCAAGACTAGCTGCTGGCAAATCCCAAATGAGGTGGCTGAATTGAAAAAGAAACAAGATGGTGATGTTACAAAAGATCAGTTAATGTCAGTTCCAAATACTAATGTATTGTCTGATAGAGGGTCTGGAATGGTTTCTCTGAATGCTCCTGCTATTAATACTGGTGGTCGTGATGCTGCAGCTCTTAAACCCTCTAGTATACAGAGCTCATCTTCGGCGTTGGATTTAATCAAGAAGAAATTGCAGGACTCAGGAACACCTGTTACTTCCTCTTCTATTCCTGTGCCATCAGGACAAACAGGATCTGAAACAAATGGTTCAAAAGCAGTTGAATCTACAGCTAAGGGCATGCAAGCAGATAATAACAAAGATAAACAAAAAGATAGTAATGGTGCTGCTAATGTTTCAGATACATCCTCAGATTCTGAAGATGAAGATAGTGGACCTTCAAAGGAGGAGTGCATAATTCAATTTAAGGAGATGCTTAAGGAGAGAGGAGTGGCACCATTCTCAAAGTGGGAGAAAGAATTGCCAAAGATAGTGTTTGATCCACGTTTTAAGGCCATCCCAAGTTATTCTGCTAGGAGATCCTTGTTTGAGCATTATGTTAAAACTCGTGCTGAAGAAGAACGCAAAGAAAAGCGTGCTGCACAGAAGGCAGCAATTGAAGGATTTAAGCAATTGCTGGATGAAGCCTCAGAGGATATTAATAGCAGTACTGATTATCAAACTTTTCGGAAGAAATGGGGAAATGATCCACGGTTTGAGGCATTGGACCGCAAGGAGCAAGAGCATCTATTGAATGAAAGAGTGCTTCCTTTGAAAAAAGCCGCCGAAGAAAAGTCGCAAGCAATGCGTGCAGCTGCTGCCACCTGTTTTAAGTCAATGCTTAAGGAGCAAGGAGATATATCTTTTAACTCACGTTGGTCAAGGGTTAAAGAAAATTTAAGGGATGACCCAAGATATAAATCTGTGAGGCATGAGGACAGGGAAGTTTTGTTCAATGAGTATATATCTGAATTGAAAGCTGCTGAACATGCAGCAGAAAGAGAGGCTAAAGCTAGAAGGGAGGAGCAGGACAAGCTCAGGGAAAGAGAACGAGAGCTGCGCAAAAGGAAGGAAAGAGAAGAACAGGAAATGGAGAGGGTGCGATTAAAAATTCGAAGAAAGGAGGCAGTTACTTCTTTTCAAGCTTTACTGGTGGAGACAATCAAAGATCCTCTGGCATCATGGACGGAATCCAAGCCTAAATTAGAAAAGGATCCTCAAGGACGTGCAACTAATCCTGAACTCGATTCTTCTGACACGGAAAAGTTGTTTCGGGAACACGTGAAGATGCTTCAGGAGCGATGTGCTCACGAGTTTAGAGTACTCTTATCTGAAGTATTGACTTCTGATGCTGCAACTCAAGAAAGTGACGATGGAAAAACAGTGCTTAATTCTTGGTCTACAGCAAAGCGTGTTCTAAAATCTGATCCAAGATATAGCAAAGTTCAAAGAAAAGAAAGAGAAGCATTGTGGCGCCGGTATGCAGAGGATATACTGCGGCGGCAAAAGGCATCTCATTCTCATGATTCCAGGGACGAGAAACATACTGATGCTAAAGCTAGGAATTCTCTAGAATCTTCCAAACATCCATTGGAATCTGGGAGATCGCACGACCGAAGATAA | 3060 | 0.4392 | MTSSAWLPQEAQPHVSGEKSLPMASSTSSSATATPSTGKPTTPLRFRFIGSPASAPAPPFPYGVLQYANTSGSSQQSSTNNALVLTLYSVVSGVSSHSAPSFSYNIPQSGAAFSSNQQHTQSSSVRPLPEICEDHLTLDQFDNNMGQLKVVECYSFIPFYHETESKNVSDSVAQDVTKLSSVSSIPHSAHTSTSIMPPSDPNYLPSTSWMPTAMSFPLHPVMPTPGNPGPPGLASSSVVSINPAVPSTGIDSSSAALLRPNMPISAIASDPTTPHKGLPYPSMPSMAAPPQGFWVQPPHLSGVFRPPYLQYPAPFPVSFPFPARSVTLPAVPIPDSQPPGVTPVSGGGGTSTPASSNHLRGTMASQTEVISGPADDNKKLNAVITQHEDAANNEQLEAWTAHKTEAGIIYYYNAVTGVSTYDKPSGFKGEGIMRFFVHGMDLPGTDWLLVSTSDGKKYYYNNRTKTSCWQIPNEVAELKKKQDGDVTKDQLMSVPNTNVLSDRGSGMVSLNAPAINTGGRDAAALKPSSIQSSSSALDLIKKKLQDSGTPVTSSSIPVPSGQTGSETNGSKAVESTAKGMQADNNKDKQKDSNGAANVSDTSSDSEDEDSGPSKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDEASEDINSSTDYQTFRKKWGNDPRFEALDRKEQEHLLNERVLPLKKAAEEKSQAMRAAAATCFKSMLKEQGDISFNSRWSRVKENLRDDPRYKSVRHEDREVLFNEYISELKAAEHAAEREAKARREEQDKLRERERELRKRKEREEQEMERVRLKIRRKEAVTSFQALLVETIKDPLASWTESKPKLEKDPQGRATNPELDSSDTEKLFREHVKMLQERCAHEFRVLLSEVLTSDAATQESDDGKTVLNSWSTAKRVLKSDPRYSKVQRKEREALWRRYAEDILRRQKASHSHDSRDEKHTDAKARNSLESSKHPLESGRSHDRR | 1019 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst2g02682 | 1019 | Gene3D | FF domain | 747 | 821 | IPR036517 | - | |
| Spst2g02682 | 1019 | Gene3D | FF domain | 671 | 746 | IPR036517 | - | |
| Spst2g02682 | 1019 | ProSiteProfiles | FF domain profile. | 614 | 668 | IPR002713 | - | |
| Spst2g02682 | 1019 | SMART | ww_5 | 442 | 474 | IPR001202 | GO:0005515 | |
| Spst2g02682 | 1019 | SMART | ww_5 | 394 | 426 | IPR001202 | GO:0005515 | |
| Spst2g02682 | 1019 | FunFam | pre-mRNA-processing protein 40C isoform X1 | 599 | 676 | - | - | |
| Spst2g02682 | 1019 | Coils | Coil | 801 | 856 | - | - | |
| Spst2g02682 | 1019 | PANTHER | TRANSCRIPTION ELONGATION REGULATOR 1 | 441 | 1016 | IPR045148 | GO:0003712|GO:0070063 | |
| Spst2g02682 | 1019 | ProSiteProfiles | FF domain profile. | 749 | 803 | IPR002713 | - | |
| Spst2g02682 | 1019 | MobiDBLite | consensus disorder prediction | 812 | 841 | - | - | |
| Spst2g02682 | 1019 | SMART | FF_2 | 681 | 736 | IPR002713 | - | |
| Spst2g02682 | 1019 | SMART | FF_2 | 749 | 803 | IPR002713 | - | |
| Spst2g02682 | 1019 | SMART | FF_2 | 852 | 909 | IPR002713 | - | |
| Spst2g02682 | 1019 | SMART | FF_2 | 614 | 668 | IPR002713 | - | |
| Spst2g02682 | 1019 | MobiDBLite | consensus disorder prediction | 332 | 360 | - | - | |
| Spst2g02682 | 1019 | FunFam | Pre-mRNA-processing protein 40C | 849 | 909 | - | - | |
| Spst2g02682 | 1019 | SUPERFAMILY | WW domain | 446 | 478 | IPR036020 | GO:0005515 | |
| Spst2g02682 | 1019 | Pfam | FF domain | 855 | 906 | IPR002713 | - | |
| Spst2g02682 | 1019 | Pfam | FF domain | 756 | 800 | IPR002713 | - | |
| Spst2g02682 | 1019 | Pfam | FF domain | 620 | 665 | IPR002713 | - | |
| Spst2g02682 | 1019 | Pfam | FF domain | 684 | 731 | IPR002713 | - | |
| Spst2g02682 | 1019 | CDD | WW | 399 | 424 | IPR001202 | GO:0005515 | |
| Spst2g02682 | 1019 | SUPERFAMILY | FF domain | 746 | 807 | IPR036517 | - | |
| Spst2g02682 | 1019 | MobiDBLite | consensus disorder prediction | 343 | 360 | - | - | |
| Spst2g02682 | 1019 | MobiDBLite | consensus disorder prediction | 980 | 1019 | - | - | |
| Spst2g02682 | 1019 | MobiDBLite | consensus disorder prediction | 546 | 617 | - | - | |
| Spst2g02682 | 1019 | SUPERFAMILY | WW domain | 398 | 428 | IPR036020 | GO:0005515 | |
| Spst2g02682 | 1019 | SUPERFAMILY | FF domain | 845 | 914 | IPR036517 | - | |
| Spst2g02682 | 1019 | CDD | WW | 445 | 474 | IPR001202 | GO:0005515 | |
| Spst2g02682 | 1019 | Gene3D | FF domain | 849 | 909 | IPR036517 | - | |
| Spst2g02682 | 1019 | Gene3D | FF domain | 910 | 976 | IPR036517 | - | |
| Spst2g02682 | 1019 | FunFam | Pre-mRNA-processing protein 40C | 741 | 815 | - | - | |
| Spst2g02682 | 1019 | SUPERFAMILY | FF domain | 609 | 674 | IPR036517 | - | |
| Spst2g02682 | 1019 | MobiDBLite | consensus disorder prediction | 19 | 41 | - | - | |
| Spst2g02682 | 1019 | SUPERFAMILY | FF domain | 911 | 982 | IPR036517 | - | |
| Spst2g02682 | 1019 | ProSitePatterns | WW/rsp5/WWP domain signature. | 447 | 472 | IPR001202 | GO:0005515 | |
| Spst2g02682 | 1019 | ProSiteProfiles | FF domain profile. | 681 | 736 | IPR002713 | - | |
| Spst2g02682 | 1019 | Gene3D | FF domain | 599 | 670 | IPR036517 | - | |
| Spst2g02682 | 1019 | Coils | Coil | 377 | 397 | - | - | |
| Spst2g02682 | 1019 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 399 | 426 | IPR001202 | GO:0005515 | |
| Spst2g02682 | 1019 | Pfam | WW domain | 397 | 424 | IPR001202 | GO:0005515 | |
| Spst2g02682 | 1019 | Gene3D | - | 437 | 490 | - | - | |
| Spst2g02682 | 1019 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 447 | 474 | IPR001202 | GO:0005515 | |
| Spst2g02682 | 1019 | MobiDBLite | consensus disorder prediction | 876 | 898 | - | - | |
| Spst2g02682 | 1019 | ProSitePatterns | WW/rsp5/WWP domain signature. | 399 | 424 | IPR001202 | GO:0005515 | |
| Spst2g02682 | 1019 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
| Spst2g02682 | 1019 | FunFam | Pre-mRNA-processing protein 40C isoform C | 677 | 740 | - | - | |
| Spst2g02682 | 1019 | ProSiteProfiles | FF domain profile. | 852 | 909 | IPR002713 | - | |
| Spst2g02682 | 1019 | FunFam | Pre-mRNA-processing protein 40C | 911 | 976 | - | - | |
| Spst2g02682 | 1019 | Gene3D | - | 394 | 431 | - | - | |
| Spst2g02682 | 1019 | SUPERFAMILY | FF domain | 673 | 742 | IPR036517 | - | |
| Spst2g02682 | 1019 | MobiDBLite | consensus disorder prediction | 546 | 580 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Spst2g02682 | K12824 | - | gmx:100815386 | 1418.29 |