Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02675 ATGGCAAGCCATCCTGGAAAACAAGCTCCTTCAAATGGGTCTGTCTATGTATGCAACTTGCCCTATGGGACTGACGAAAACATGTTGGCTGAATATTTTGGCACCATTGGATTAGTGAAGAAAGATAAACGTACAGGGAGGCCAAAAATATGGTTATATCGAGACAAAGAGACTAATGAACCAAAGGGAGATGCTACTGTAACGTATGAAGATCCACATGCTGCTGTAGCTGCTGTTGAATGGTTTAACAACAAAGATTTTCATGGCAATATAATTGGAGTTTTTATAGCAGAGTCAAAAAACAAGGACGACCAAACATATAATTCAGCAGCAGTAGAACCTGTAGTTGCGGGTGACGGTGGTGGATTAGAGGAAACTACAAAGGATGTTAATGGTGGAGGTGGAAGAGGTAGAGGCCAAAATGATGCTTCAGGCAAAGCATGGCAGCAAGATGGCGATTGGTTGTGTCCGAATACAAGTTGCTCCAATGTGAACTTTGCTTTTCGTGGTGCGTGTAATCGCTGTGAAACTGCCCGTCCTGCTGGTGCTGCTGGAATTTCAGGGGCTGGTGGCCGTGGCAAGGGACGTGCTGCTGGACAAGAATCAGGGGGTGTTGGCCGGCCAGTTGGTGGAGGACTATTTGGTCCCAATGATTGGCCTTGTCCAATGTGTGGCAATATCAACTGGGCAAAGCGGACTAAATGCAACATTTGCAATACGAATAAGCCTGGGCATAATGAGGGTGGTGTGAGAGGAGGACGAGGTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATAGAAGAAACTAGACGTCGTAGGAGGGAAGCTGAAGATGATGGGGAGTTGTATGATGAATTTGGAAATCTAAAGAAAAAATTCCGTGCCAAAACACAGCAAGCTGAAGCTGCACGAGGGCTTCCTGGTTCAGGACGTGCTGGTTGGGAGGTTGAAGATCTAGGGATAGACAGGGATGGTAGAGAAAGTAGAGACAGAGGAAGGGAACGTAATGATGGGGAGAGCAGGAACAGAGAACGAAGTGACAAAGAGAGGCAAAGCAGTTGGAATAGGGACAGGGACAGAGGAAGAGATCGAGACTGGGACTATGTTGGTCGAGATAGAGATTATGGGCGAGATCGGGACAGAAGTAGACACCGTTATTGA 1161 0.4668 MASHPGKQAPSNGSVYVCNLPYGTDENMLAEYFGTIGLVKKDKRTGRPKIWLYRDKETNEPKGDATVTYEDPHAAVAAVEWFNNKDFHGNIIGVFIAESKNKDDQTYNSAAVEPVVAGDGGGLEETTKDVNGGGGRGRGQNDASGKAWQQDGDWLCPNTSCSNVNFAFRGACNRCETARPAGAAGISGAGGRGKGRAAGQESGGVGRPVGGGLFGPNDWPCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEEIEETRRRRREAEDDGELYDEFGNLKKKFRAKTQQAEAARGLPGSGRAGWEVEDLGIDRDGRESRDRGRERNDGESRNRERSDKERQSSWNRDRDRGRDRDWDYVGRDRDYGRDRDRSRHRY 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02675 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 99 IPR000504 GO:0003723
Spst2g02675 386 Gene3D - 147 183 - -
Spst2g02675 386 Gene3D - 214 245 - -
Spst2g02675 386 SUPERFAMILY Ran binding protein zinc finger-like 144 182 IPR036443 -
Spst2g02675 386 Gene3D - 12 95 IPR012677 -
Spst2g02675 386 SMART rrm1_1 14 95 IPR000504 GO:0003723
Spst2g02675 386 ProSitePatterns Zinc finger RanBP2-type signature. 154 175 IPR001876 -
Spst2g02675 386 ProSitePatterns Zinc finger RanBP2-type signature. 219 238 IPR001876 -
Spst2g02675 386 Pfam Zn-finger in Ran binding protein and others 218 244 IPR001876 -
Spst2g02675 386 Pfam Zn-finger in Ran binding protein and others 151 180 IPR001876 -
Spst2g02675 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 90 IPR000504 GO:0003723
Spst2g02675 386 MobiDBLite consensus disorder prediction 245 279 - -
Spst2g02675 386 SUPERFAMILY RNA-binding domain, RBD 10 102 IPR035979 GO:0003676
Spst2g02675 386 SMART zf_4 217 241 IPR001876 -
Spst2g02675 386 SMART zf_4 152 178 IPR001876 -
Spst2g02675 386 FunFam HIV Tat-specific factor 1 12 96 - -
Spst2g02675 386 FunFam TATA-binding protein-associated factor 2N isoform X1 148 182 - -
Spst2g02675 386 ProSiteProfiles Zinc finger RanBP2 type profile. 150 181 IPR001876 -
Spst2g02675 386 MobiDBLite consensus disorder prediction 118 146 - -
Spst2g02675 386 MobiDBLite consensus disorder prediction 294 386 - -
Spst2g02675 386 SUPERFAMILY Ran binding protein zinc finger-like 211 245 IPR036443 -
Spst2g02675 386 FunFam Zinc finger Ran-binding domain-containing protein 2 210 244 - -
Spst2g02675 386 CDD RRM_SARFH 15 97 - -
Spst2g02675 386 Coils Coil 259 279 - -
Spst2g02675 386 MobiDBLite consensus disorder prediction 256 279 - -
Spst2g02675 386 MobiDBLite consensus disorder prediction 316 386 - -
Spst2g02675 386 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 104 383 - -
Spst2g02675 386 ProSiteProfiles Zinc finger RanBP2 type profile. 215 244 IPR001876 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02675 - - gmx:100780819 579.326