Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02625 ATGGAAGTTAACCTCTCTCTCAACCACCACCGCGCCCTCTCTCTAGCCTCCCGCACTCCCTCCCTCTCCACTCTCCGCACGCACTTCCTCGCCTCCACTCACACTCTCCGTCCCCCTCCAACGCCCCCCTCCCTTCGCTCCCGCAACAAACGCTCCACCCGCCATAACTTAGGTCTCCTCCGCTTCCACTCCCCGCGCTTCGTCTTCAAGGCCTCCCTCCATTCCCACTCCGTCATCGTCGTCGTCATCGTCGTCACTTTATCCGCCGTTTCCTGGCTCCACTTCACTCTCACCAAGAAAAAAAACAAGTCTCTTAACCAGGAGATTCTTCACTCCACAGCTTGGATTAATGCATTTAGTGTTCTGGATAGAGTGTTACTGCTAGTGAAGCTATTACAGACACGGGGGCATGCGAATTTCGCGTTATCGCCGCAGGGAACTAATGTTGGGAGCCGGGTCATTGATGACGACATTCTTGGTTTTACGGAATTTCAAAGGGATAACAAGCTGACTGAGATTGGGAAGTTGAAGGATCAGCATGGGGAAGACTACCGCGTCTTTGAGGAAAACGAGATCCACCTCCCGTTTTTGAAATCTTCAGTGGTGCAAGAAGTGGCCCTCGCGACTGAGACTTCAGAGTCATCTTCTTCTGTTCTTGACTCTGGTGTGAATAATAATGATAGTAATAATAGTTCCAAGGTATTGGATGAGTCTTTTTTATCCGTGGCTTTCTCACCAAGTTCATTACCACCTCTGGAGTTTGCTGAGGAAATGGCTATACAAGTGGAAGAAAGTCAAGAAAAAATTGAACTTGGTGCCATCAACGGTGATGCCCTTTTTGGTGAGTCAGTTAGAGAAGGGTTATACATGTTTTATGAGGTTAACAAGTCTGCAACTGGATCTATGGCACCGCTGAGTAGTTTAAAGTCATTATCTCCCCGTGCTTCTTTTATGAATAAAAAAAGATCTCCCTCAGTGATGGGAAATGCCACGCTGAAAGCAACAGGATTATCTACAAATACTCCTCTACAAAATGCAGAACATGTAAAAGGAGCTGTTGAAATTTTCGGTCATAAAGATGGCTACCCTCCACAACATGTTTATCATGCCAAGTTTTTTAACACCTGCAAGAAAAGAAAGGCTGTTAAAGAGGCTTTTGATTACATTAGGCTCATTCCAAATCCAACGCTGAGTACATTTAATATGCTTATGTCGGTGTGCGCAAGCTCCCAAGATTCAGAAAGGGCTTTCCAAGTTTTGCAGCTTCTTAAGGATGCTCAACTAGAACCTGATTGCAAACTTTATACCACTCTGATATTAACTTGTGCAAAGAGTGGGAAAGTTGATCTAATGTTTGAAGTTTTTCACAAGATGGTTAATGCTGGAGTGGAACCTAACGTTCATACCTATGGAGCACTTATTGATGGTTGTGCTAGAGCTGGGCAAGTAGCTAAAGCATTTGGTGCTTATGGAATTATGAGGTCAAAGAATGTGAAGCCAGATCGTGTTGTATTCAATGCACTTATAGCTGCTTGTGCCCAATCAGGAGCTGTAGATCGTGCTTTTGATGTGTTAGCAGAAATGGCAGCAGAAATACAGCCCATCGACCCAGATCACGTAACTATCGGTGCATTGCTGAAGGCATGCACTAAAGCCGGTCAGGTTGAACGAGCACAAGAAGTGTACAGGATGGTACAAAAATATAACATAAAGGGATGCCCAGAAGTTTACACCATTGCCATTAATTCTTGTAGCCAAACTGGGGATTTGGAATTTGCTCTGGCTGTATATAATGACATGACGCAGAAAGGGATCCTCCCAGATGAGATATTTCTGAGTGCACTGATAGATGTTGCTGGTCATGCTAAAAACCTGGATGCTGCCTTTGATGTCCTACAAGAAGCCCATAAAGGAGGAATACAGATTGGAATAATGCCATATAGCTCATTGATGGGTGCCTGTAGTAATGCAAGAAATTGGCAGAAAGCATTGGAGCTATATGAATATCTTAAATCTCTTAAATTGACATTGACAGTTTCAACAATTAATGCTTTGCTCACTGCACTTTGTGATGGAGATCAATTTCAAAAGGCTTTGGAGGTTTTTTCTGAAATGAAAGGATTAGGATTGTGCCCAAACAGTATCACATTCTCGATACTTATAGTGGCAAGTGAGAAAAAGGATGATATGGAGGCAGCTCAAATGCTCCTTTATCAAGCCAAAAAAGATGGTGTAGCGACTAACCTCATCATATCTCGATGCATAATTGTTCTATGGTTTGTAAATCCTGATAGCGCTTCGATTTCTTTGAAAGGCATGTGCCAGCGGAGATTTGAGAAGGCTTGCATTGTTGGTGAGCCTGTTTTATCTTTTCGCTCAGGACGGCCACAAGTTGATAATAAATGGACATCACTGGCCTTAATGGTGTATCGTGAAACAATTGAAGCTGGTCAAAAACCTACAATTGAAATATTGTCACATATTCTGGGATGCCTGCAACTCCCTTATGATGCATCTCTGAAAAATAGACTTGCTGAGAACTTAGGAGTAAGTGCAGAACCTTCAAGAAGTTCAAACCTCTGTTCATTAATGGATGGATTTGGTGAATACGATCCTCGTGCTTTTTCAATACTTGAGGAATCTGCTTCATATGGAGTTGTTCCATCTGTATCGTTTAAAGTGAACCCCATTGTTATTGATGCTAAAGAATTACATTCTTCTATTGTTGAGGTGTATCTCATAACAGTTTTGAAAGGTCTCAAGCATAGACTAGCAGCAGGTGCAAGATTGCCCAATATAATCATTTTATTGCCTGTAGAGAAAACAGAAGTCGTGTCTCTAAAGGGGAAGAAGATCATTAACCTTGCAGGAAGAGCTGGGCAAGCAGTTGGAGCGTTATTGAGGAGGCTTCGGATTCCTCACCTTGGTAATGAATCGAATGGTAAGCTTAGAATTAATGGTCTGTCTTTGAAAAAATGGTTTCAGCCGAAACTTGCATCTCCATTTAGCGGAAAACCAGGTGATTGGAGTTCCTCCATATCACGACTAGGCAAAAGTATTAGCCATCAGCAACGAAACATCCGAATGGGCAATCTGTCTTTGGACTAA 3108 0.4295 MEVNLSLNHHRALSLASRTPSLSTLRTHFLASTHTLRPPPTPPSLRSRNKRSTRHNLGLLRFHSPRFVFKASLHSHSVIVVVIVVTLSAVSWLHFTLTKKKNKSLNQEILHSTAWINAFSVLDRVLLLVKLLQTRGHANFALSPQGTNVGSRVIDDDILGFTEFQRDNKLTEIGKLKDQHGEDYRVFEENEIHLPFLKSSVVQEVALATETSESSSSVLDSGVNNNDSNNSSKVLDESFLSVAFSPSSLPPLEFAEEMAIQVEESQEKIELGAINGDALFGESVREGLYMFYEVNKSATGSMAPLSSLKSLSPRASFMNKKRSPSVMGNATLKATGLSTNTPLQNAEHVKGAVEIFGHKDGYPPQHVYHAKFFNTCKKRKAVKEAFDYIRLIPNPTLSTFNMLMSVCASSQDSERAFQVLQLLKDAQLEPDCKLYTTLILTCAKSGKVDLMFEVFHKMVNAGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGAVDRAFDVLAEMAAEIQPIDPDHVTIGALLKACTKAGQVERAQEVYRMVQKYNIKGCPEVYTIAINSCSQTGDLEFALAVYNDMTQKGILPDEIFLSALIDVAGHAKNLDAAFDVLQEAHKGGIQIGIMPYSSLMGACSNARNWQKALELYEYLKSLKLTLTVSTINALLTALCDGDQFQKALEVFSEMKGLGLCPNSITFSILIVASEKKDDMEAAQMLLYQAKKDGVATNLIISRCIIVLWFVNPDSASISLKGMCQRRFEKACIVGEPVLSFRSGRPQVDNKWTSLALMVYRETIEAGQKPTIEILSHILGCLQLPYDASLKNRLAENLGVSAEPSRSSNLCSLMDGFGEYDPRAFSILEESASYGVVPSVSFKVNPIVIDAKELHSSIVEVYLITVLKGLKHRLAAGARLPNIIILLPVEKTEVVSLKGKKIINLAGRAGQAVGALLRRLRIPHLGNESNGKLRINGLSLKKWFQPKLASPFSGKPGDWSSSISRLGKSISHQQRNIRMGNLSLD 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02625 1035 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 573 607 IPR002885 -
Spst2g02625 1035 FunFam Pentatricopeptide repeat-containing protein MRL1 chloroplastic 623 785 - -
Spst2g02625 1035 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 531 IPR002885 -
Spst2g02625 1035 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 466 500 IPR002885 -
Spst2g02625 1035 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 538 572 IPR002885 -
Spst2g02625 1035 Gene3D Tetratricopeptide repeat domain 358 532 IPR011990 GO:0005515
Spst2g02625 1035 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 531 622 - -
Spst2g02625 1035 Pfam Pentacotripeptide-repeat region of PRORP 546 688 IPR033443 -
Spst2g02625 1035 Pfam Pentacotripeptide-repeat region of PRORP 398 537 IPR033443 -
Spst2g02625 1035 Gene3D Tetratricopeptide repeat domain 533 645 IPR011990 GO:0005515
Spst2g02625 1035 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Spst2g02625 1035 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Spst2g02625 1035 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 678 712 IPR002885 -
Spst2g02625 1035 NCBIfam pentatricopeptide repeat 434 467 IPR002885 -
Spst2g02625 1035 NCBIfam pentatricopeptide repeat 399 432 IPR002885 -
Spst2g02625 1035 NCBIfam pentatricopeptide repeat 576 609 IPR002885 -
Spst2g02625 1035 NCBIfam pentatricopeptide repeat 681 713 IPR002885 -
Spst2g02625 1035 NCBIfam pentatricopeptide repeat 647 675 IPR002885 -
Spst2g02625 1035 NCBIfam pentatricopeptide repeat 468 501 IPR002885 -
Spst2g02625 1035 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 11 354 - -
Spst2g02625 1035 Gene3D Tetratricopeptide repeat domain 646 777 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02625 382 777 Glycosyltransferase AT1G05670 23.059 4.86e-29 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02625 - - gmx:100814164 1139.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02625 2 25849500 25859240 Spst2g02625 2 25849500 25859240 ECH