Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02590 ATGGATTCACAGAGAGTCATGGCTCTCACCCTCACACACTCCACATTCCTTCCTTCTTCTTCCATTTCATACCTTCACCCTTCCATTTCACACTATTTTCATCTTCATACTCTTTCAAAACCTTTCCTTCTTTCACACACCAAAATCTCAATCTCCCCGCTCTCCAAAACCCTATATCTTTGTGCATCACCATCCAACACCGCACACCTTTCACCAACCCCCATTTTCCTCCCATATCTCCAACAAGAACCAGAACCAGAAGAACAAGAGGTCATAGAAACAATAGAAGAAGAGGAAAAAGAACCAGCTCATGACCCAGATGATCCAATCTACAAATTCTTCAAAACCCGCAGTAGGGTTTCCTTCCAAGACCCTGGAAAAGAAGGAAGGTTGTCGCTTCAGAAGAACCGTCGCATATCATGGCACCTTGCTTCTGACACCAGTGACCTTGTTGAAGAAGAATTTGAAACGAGTTTGGAGGGTGGTTCCTTGTTGGTTGAAAAAAGGAAAGAAATGGTGTGTGAGAAAAAGGGTTTGCCTTTACCTGAGGGGATTGTGGGGGAGATTGTTCAGCTTGCAAGGAACTTGCCACAGAATCTTACACTGGAGGAGGGTTTGGTGGAATATGAAGGAAGAGTTAGTGAGAAAGAGTGTTGGGAGGTTTTAAAATCACTTGGGGAGGAGCACCTTCTGGTGTCTTGTTTATATTTCTTTCAGTGGATGAGGTCGCAGGAACCTTCACTTGTTACACCTCGGGCTTGCACTGTGTTGTTTCCTTTGTTGGGAAAGGCAAGGATGGCTGATAAGTTGATGGTTTTGTTCTCAAACTTACCATCCACCAAGGAGTTCAGAGATGCTCATGTTTACAATGCCGCAATTTCAGGCCTTCTTTCAAGTGGCAGGTATGAAGATGCTTGGAAGGTGTATGAGTCAATGGAAGCGGATAATGTTCTTCCAGATCATGTGACATGTTCTATTATGGTTATTGTTATGAGAAAACTTGGCCATAGTGCAAAAGATGCATGGCAGTTTTTTGAAAAAATGAATGGTAAAGGAGTCAAATGGGGTGAAGAAGTCCTAGGTGCGCTAATAAAGTCATTTTGTGTTGAGGGATTGATGAGTGAAGCTCTCATCATCCTATCTGAAATGGAGAAGAAAGGGGTTTCTCCAAATGCAATTGTGTACAACACCCTGATGGATGCATATTGTAAATCCAACAGTGTAGAAGAAGCTGAAGGCCTTCTTGTTGAGATGAAAGCTAAAGGGATTAAGCCCACTGAAGCTACATTCAACATTCTAATGCATGCATACAGCAGAAAAATGCAGCCTGAGATTGTGGAGAAGCTGATTGCTGAAATGCATGATGTTGGGTTGAAGCCAAATGCCAAATCATATACTTGTCTAGTCAGTGCATATGGGAAGCAGAAAAAGATGAGTGACATGGCTGCAGATGCATTCTTGAAGATGAGGAAAAATGGTATTAAACCCACTTTGCATTCTTATACAGCTCTGATCCATGCATATTCCGTTGGTGGCTGGCATGAGAAAGCTTATGCAGCATTTGAAAACATGCAAAGGGAAGGTGTTAAACCATCCATAGAAACTTACACTGCTTTACTAGATGCATTTAGACGAGCTGGTGACACCGAAACATTAATGAAAATATGGAAGTTGATGAGGAGGGAGAAAGTTGAAGTAACCCGGGTGACTTTCAATACTCTTGTTGATGGTTTTTCTAAACATGGTCACTACAAGGAAGCAAGAGATGTAATATCTCAATTTGGGAAAGTTGGATTGCACCCAACATTGTTGACTTACAATATGCTGATAAATGCATATGCACGAGGGGGTCGACACTCAAAGCTGCCAGAGTTGTTGGAAGAGATGGCAGATCATAACTTAAAGCCAGATTCTGTAACTTATTCAACTATGATATATGCATTTCTCCGTGTCCGAGATTTTGCGCAGGCATTCTTTTATCACCAGGAGATGGTCAAGAATGGTAAGGTAATGGATGCCAATTCTTATCAGAAGCTTCGGGCCATTCTGGATGTGAAAGTTGCTGTTAAAAACAGAAAGGATAGGAGATCTTTGATTGGTGTGGTTAGAAATAAGATGGGTGTTGTTAAACCCAAAAGAAAAAAGGACGAGTTATGGAAGTACAAGAAAAGACATTTGCAAAAACGGTAG 2190 0.4174 MDSQRVMALTLTHSTFLPSSSISYLHPSISHYFHLHTLSKPFLLSHTKISISPLSKTLYLCASPSNTAHLSPTPIFLPYLQQEPEPEEQEVIETIEEEEKEPAHDPDDPIYKFFKTRSRVSFQDPGKEGRLSLQKNRRISWHLASDTSDLVEEEFETSLEGGSLLVEKRKEMVCEKKGLPLPEGIVGEIVQLARNLPQNLTLEEGLVEYEGRVSEKECWEVLKSLGEEHLLVSCLYFFQWMRSQEPSLVTPRACTVLFPLLGKARMADKLMVLFSNLPSTKEFRDAHVYNAAISGLLSSGRYEDAWKVYESMEADNVLPDHVTCSIMVIVMRKLGHSAKDAWQFFEKMNGKGVKWGEEVLGALIKSFCVEGLMSEALIILSEMEKKGVSPNAIVYNTLMDAYCKSNSVEEAEGLLVEMKAKGIKPTEATFNILMHAYSRKMQPEIVEKLIAEMHDVGLKPNAKSYTCLVSAYGKQKKMSDMAADAFLKMRKNGIKPTLHSYTALIHAYSVGGWHEKAYAAFENMQREGVKPSIETYTALLDAFRRAGDTETLMKIWKLMRREKVEVTRVTFNTLVDGFSKHGHYKEARDVISQFGKVGLHPTLLTYNMLINAYARGGRHSKLPELLEEMADHNLKPDSVTYSTMIYAFLRVRDFAQAFFYHQEMVKNGKVMDANSYQKLRAILDVKVAVKNRKDRRSLIGVVRNKMGVVKPKRKKDELWKYKKRHLQKR 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02590 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Spst2g02590 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 496 IPR002885 -
Spst2g02590 729 Pfam PPR repeat family 390 438 IPR002885 -
Spst2g02590 729 Pfam PPR repeat family 285 328 IPR002885 -
Spst2g02590 729 Pfam PPR repeat family 602 648 IPR002885 -
Spst2g02590 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 460 IPR002885 -
Spst2g02590 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Spst2g02590 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 567 601 IPR002885 -
Spst2g02590 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 532 566 IPR002885 -
Spst2g02590 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Spst2g02590 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 637 671 IPR002885 -
Spst2g02590 729 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 385 548 - -
Spst2g02590 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 602 636 IPR002885 -
Spst2g02590 729 Pfam PPR repeat 362 388 IPR002885 -
Spst2g02590 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 531 IPR002885 -
Spst2g02590 729 Pfam Pentatricopeptide repeat domain 449 508 IPR002885 -
Spst2g02590 729 Pfam Pentatricopeptide repeat domain 521 576 IPR002885 -
Spst2g02590 729 Gene3D Tetratricopeptide repeat domain 339 456 IPR011990 GO:0005515
Spst2g02590 729 NCBIfam pentatricopeptide repeat 429 462 IPR002885 -
Spst2g02590 729 NCBIfam pentatricopeptide repeat 393 427 IPR002885 -
Spst2g02590 729 NCBIfam pentatricopeptide repeat 569 602 IPR002885 -
Spst2g02590 729 NCBIfam pentatricopeptide repeat 639 672 IPR002885 -
Spst2g02590 729 NCBIfam pentatricopeptide repeat 464 497 IPR002885 -
Spst2g02590 729 NCBIfam pentatricopeptide repeat 605 638 IPR002885 -
Spst2g02590 729 NCBIfam pentatricopeptide repeat 535 566 IPR002885 -
Spst2g02590 729 NCBIfam pentatricopeptide repeat 288 320 IPR002885 -
Spst2g02590 729 NCBIfam pentatricopeptide repeat 362 392 IPR002885 -
Spst2g02590 729 NCBIfam pentatricopeptide repeat 499 532 IPR002885 -
Spst2g02590 729 Gene3D Tetratricopeptide repeat domain 474 582 IPR011990 GO:0005515
Spst2g02590 729 Gene3D Tetratricopeptide repeat domain 583 694 IPR011990 GO:0005515
Spst2g02590 729 Gene3D Tetratricopeptide repeat domain 188 338 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02590 Spst-Chr2 25645843 25649083 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02590 271 679 Glycosyltransferase AT1G05670 24.379 4.26e-44 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02590 - - gmx:100775643 1179.85