Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02554 ATGGTAACACTTCTTGCCACCTTACGAACGTCACAGGCATGGAAAAAGTATAGATTTTGTACAAAGGAAAAGTGGAATTCAGATGGAGGGAGAACGGTTGTCCTTGCCGCATCCATTGTGAGCAAAACTGGAAAAGTGCTAGTTTCTAGACAGTTTGTGGACATGTCTCGTATCAGAATTGAGGGTCTTTTAGCAGCATTTCCCAAGTTGGTAGGAACTGGAAAGCAGCACACGTATTTCGAGACGGAGAATGTACGCTATGTTTACCAGCCAATAGAAGCACTGTACCTGCTTCTTGTAACAAACAAAAATAGCAACATACTGGAAGATTTGACAACTCTGAGACTTCTCTCTAAAATTGTGCCTGAATATTCGTACACCCTTGATGAAGAGGGTATTTGCGAACATGCATTTGAGTTGATTTTTGCATTTGATGAAATCATCTCTCTTGGGCACAAGGAAAATGTGACTGTTGCACAAGTTAAGCAATACTGTGAGATGGAGAGTCATGAAGAGAAACTGCACAAACTAGTTATGCAGAGCAAAATCAATGAAACTAAGGATGTTATGAAGCGGAAAGCTAGTGAGATTGATAAAAGCAAGATTGAAAAAAACAAAGGTGATAAAGGGGGATTTGGTCCTTTACAATCACTGGGCTCTGGAAAAATGGAAAATAGCTTTAGTGATTTGAGCATATCTATCAGCGGAACTGCTTTTGGAAGTGGCTCTGGTTTCGGATTGAGTTCTGATGTTGATTCCTTTCCTACTAAGACTAAAGGTCGTCCTACTTCATCAGCTACTGCTGCACCAAAAGGTCTTGGAATGAAGCTTGGTAAATCCCAAAGGACAAACCAGTTTTTGGAATCATTAAAAGCAGAAGGTGAGGTCATTCTTGAAGATGTTCAGCCAAAACATAGCCTGTCTCAGGCAGCTGCCCCACCACCTACGGATCCCATCACTTTATCTGTTGAAGAGAAACTAAGTGTGACACTAAAACGAGATGGTGGAATCAGTAATTTTGATGTGCAAGGCACATTGTCTCTCCAAATTCTCAACAAAGAGAATGGACTTATTCAAGTTCAGGTCCGAACTGGTGAGAATCAGGCAATCATTTTCAAGACACACCCTAACATGAATAAAGAATTATTTACCAAAGAAAATATACTAGGACTAAAGGATCCCAGTAGACCTTTCCCCACTGGTCAAACTGGTGGTTCTGAAGGTGTTGGTCTTTTAAAGTGGAGAATGCAAAGCACTGATGAATCAATGGTGCCGCTGACAATCAACTGCTGGCCCTCTTCTTCTGGAAACAATACTTATGTCAGCATCGAGTACGAGGCTTCCTCAATGTTTGATTTGCGGAATGTTGTGATCTCAGTACCTCTTCCATCTCTTCGAGAAGCACCATCTGTTAACCAGATTGATGGGGAATGGAGGTATGACTCTAGGAATTCCTTTTTGGAGTGGTCTGTCTTGCTGATTGATAATTCAAACCGCAGTGGGTCAATGGAATTTGTTGTTCCACAAGCCGATTCATCAGCATTCTTCCCCATTTCAGTTCGTTTTATGGCAACAGATACATTTAGCGACCTGAAGGTCACCAACACCATACCGCTAAAGGGTGGTAATCCTCCTAAATATTCTCAGAGGACACAGTTGATCACAGAAAACTACCTAGTTGTGTGA 1686 0.4152 MVTLLATLRTSQAWKKYRFCTKEKWNSDGGRTVVLAASIVSKTGKVLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYFETENVRYVYQPIEALYLLLVTNKNSNILEDLTTLRLLSKIVPEYSYTLDEEGICEHAFELIFAFDEIISLGHKENVTVAQVKQYCEMESHEEKLHKLVMQSKINETKDVMKRKASEIDKSKIEKNKGDKGGFGPLQSLGSGKMENSFSDLSISISGTAFGSGSGFGLSSDVDSFPTKTKGRPTSSATAAPKGLGMKLGKSQRTNQFLESLKAEGEVILEDVQPKHSLSQAAAPPPTDPITLSVEEKLSVTLKRDGGISNFDVQGTLSLQILNKENGLIQVQVRTGENQAIIFKTHPNMNKELFTKENILGLKDPSRPFPTGQTGGSEGVGLLKWRMQSTDESMVPLTINCWPSSSGNNTYVSIEYEASSMFDLRNVVISVPLPSLREAPSVNQIDGEWRYDSRNSFLEWSVLLIDNSNRSGSMEFVVPQADSSAFFPISVRFMATDTFSDLKVTNTIPLKGGNPPKYSQRTQLITENYLVV 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02554 561 PANTHER COATOMER SUBUNIT DELTA 33 561 IPR027059 GO:0006890|GO:0030126
Spst2g02554 561 MobiDBLite consensus disorder prediction 194 208 - -
Spst2g02554 561 CDD Delta_COP_N 35 164 - -
Spst2g02554 561 SUPERFAMILY SNARE-like 36 173 IPR011012 -
Spst2g02554 561 ProSiteProfiles Mu homology domain (MHD) profile. 316 561 IPR028565 -
Spst2g02554 561 MobiDBLite consensus disorder prediction 194 218 - -
Spst2g02554 561 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 316 558 IPR036168 -
Spst2g02554 561 FunFam Coatomer subunit delta 319 427 - -
Spst2g02554 561 Gene3D Mu homology domain, subdomain B 319 535 - -
Spst2g02554 561 FunFam Coatomer subunit delta 428 523 - -
Spst2g02554 561 CDD AP_delta-COPI_MHD 317 558 - -
Spst2g02554 561 Gene3D - 34 172 - -
Spst2g02554 561 Pfam Adaptor complexes medium subunit family 315 535 IPR028565 -
Spst2g02554 561 MobiDBLite consensus disorder prediction 253 278 - -
Spst2g02554 561 Gene3D Mu homology domain, subdomain B 424 523 - -
Spst2g02554 561 FunFam Coatomer subunit delta 34 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02554 Spst-Chr2 25268384 25273675 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02554 K20471 - gmx:100806837 919.457