Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02552 ATGTCCGGCCCTCTCGACCGTTTCGCCAGACCCTGTTTCGAAGGCTTCTCCGGGAGCGACGAGAAGAAGGAGCGGAAATCTGATTTCGAGAACTCCGAGGACGAACGGAGGACCAGAATTGGATCTCTCAAGAAGAAGGCGTTGAATGCGTCGTCGAAGTTTAAGCACTCACTGAAGAAGAAGAGCAGCAGGAGGAAGAGCGATGGCCGTGTCAGCTCTGTTTCCATTGAGGATGTTCGGAATTTCGAGGAGCAACAGGCCGTTGATGCATTTCGCCAATCCCTGATCATCGATGAATTGCTCCCCGAGAAACACGATGATTACCATGTCATGTTAAGGTTCCTGAAAGCGAGGAAGTTTGACATTGAAAGGGCAAAGCATATGTGGGCTGATATGCTACAGTGGAGGAAGGAGTTTGGTGCTGACACTATTATGGAGGATTTTGAGTTCTTAGAATTAAATGAAGTTATGAAGTATTATCCGCACGGCCATCACGGTGTTGATAGGGAGGGAAGGCCTGTTTACATTGAGAGACTTGGGAAAGTAGATCCGAACAAACTTATGCAGGTTACGACCATGGATAGATATGTAAGATACCATGTACGGGAGTTTGAGAAAGCTTTCAAGATAAAGTTTCCTGCTTGCACAATTGCCGCCAAAAGGCACATTGACTCAAGCACCACGATATTAGATGTTCAAGGCGTGGGTCTTAAGAACTTTACAAAGTCTGCCCGGGAACTGATTATGCGTTTACAGAAGATTGATGGTGACAATTACCCTGAGACTCTTTGCCAAATGTTTATCATAAATGCTGGCCCTGGATTTAGGTTACTGTGGAACACAGTCAAGTCTTTCCTTGATCCCAAAACAACTTCAAAGATCCATGTTCTTGGAAATAAGTACCAAAGCAAATTACTTGAAGTAATCGATGGCAGTGAGTTGCCAGAATTTCTGGGAGGTACCTGTACATGTGCAGATCAGGGTGGTTGCCTCAGATCTGACAAAGGTCCCTGGAAAAACCCTGAAATTTTGAAGATGATTCTCAGTGGTGAAGCACGAAGAGCAAGGCCGGTGGTAAAAGTTCTTAACAGCGACGGGAAGGTTATTGCATATGCCAGACCACAATACCCAATGGTAAAAGGTAGTGACACTTCCACAGCTGAATCAGGATCTGAAGCTGAAGATATTGCCTCTCCTAAAGCAATGAAGAGCTACTCTCACCTGAGGTTGACACCTGTTCGCGAGGAAGCTAAGGTAGTTGGAAAGTCAAGCTATGTTGGTGGTGGTAACTTGGCTGGGTACGATGAATATGTTCCAATGGTGGACAAAGCTGTTGATGCTGGCTGGAAGAAGCAAGCATCACTCCAGAGGGCTCAAACTTCAAAAGGAGCACCTTCCCTCCCTGAACCTCCAAAACCTCCAGAAGGAATTAGAGCTCGGATTGTGGTAGCTTTAACTGTTTTCTTGATGATGCTGTTTACTCTCTTCCGCACAGTCGCAACATGTGTGACCAAGAGGCTTCCTGCCGCCTCATCTAATGAGGATCAGTGCACTTTAGAGCCACCCGTTGATGGAACAAATGAAGTCAATAGTACTCCATCATCAAATCCAGAAGACACAGAGGCAAATCTCCTTTCCTCAATGATGAAAAGATTAGGTGAACTTGAAGAGAAGGTTGACACACTCCAATCTAAGCCATCTGAGATGCCTTATGAGAAAGTGGAATTGCTAAATGCTGCTGTTTGTCGGGTGGATGCTTTGGAAGCAGAGCTAATTGCAACTAAAAAGGCTCTGTATGAAGCATTAATGAGGCAAGAAGAGCTGCTTGCTTACATTGATAGTCAAGAAAAACCTAAGTTGCGGAAGAAGTTTTGCTGGTGA 1881 0.453 MSGPLDRFARPCFEGFSGSDEKKERKSDFENSEDERRTRIGSLKKKALNASSKFKHSLKKKSSRRKSDGRVSSVSIEDVRNFEEQQAVDAFRQSLIIDELLPEKHDDYHVMLRFLKARKFDIERAKHMWADMLQWRKEFGADTIMEDFEFLELNEVMKYYPHGHHGVDREGRPVYIERLGKVDPNKLMQVTTMDRYVRYHVREFEKAFKIKFPACTIAAKRHIDSSTTILDVQGVGLKNFTKSARELIMRLQKIDGDNYPETLCQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEVIDGSELPEFLGGTCTCADQGGCLRSDKGPWKNPEILKMILSGEARRARPVVKVLNSDGKVIAYARPQYPMVKGSDTSTAESGSEAEDIASPKAMKSYSHLRLTPVREEAKVVGKSSYVGGGNLAGYDEYVPMVDKAVDAGWKKQASLQRAQTSKGAPSLPEPPKPPEGIRARIVVALTVFLMMLFTLFRTVATCVTKRLPAASSNEDQCTLEPPVDGTNEVNSTPSSNPEDTEANLLSSMMKRLGELEEKVDTLQSKPSEMPYEKVELLNAAVCRVDALEAELIATKKALYEALMRQEELLAYIDSQEKPKLRKKFCW 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02552 626 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 152 326 IPR001251 -
Spst2g02552 626 MobiDBLite consensus disorder prediction 510 540 - -
Spst2g02552 626 SUPERFAMILY CRAL/TRIO N-terminal domain 82 148 IPR036273 -
Spst2g02552 626 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 24 615 - -
Spst2g02552 626 Pfam CRAL/TRIO, N-terminal domain 104 131 IPR011074 -
Spst2g02552 626 SUPERFAMILY CRAL/TRIO domain 154 345 IPR036865 -
Spst2g02552 626 SMART CRAL_TRIO_N_2 107 132 IPR011074 -
Spst2g02552 626 Coils Coil 545 565 - -
Spst2g02552 626 PRINTS Cellular retinaldehyde-binding protein signature 312 321 - -
Spst2g02552 626 PRINTS Cellular retinaldehyde-binding protein signature 279 298 - -
Spst2g02552 626 PRINTS Cellular retinaldehyde-binding protein signature 110 132 - -
Spst2g02552 626 MobiDBLite consensus disorder prediction 452 475 - -
Spst2g02552 626 SMART sec14_4 152 323 IPR001251 -
Spst2g02552 626 FunFam SEC14 cytosolic factor 140 352 - -
Spst2g02552 626 Pfam CRAL/TRIO domain 158 320 IPR001251 -
Spst2g02552 626 MobiDBLite consensus disorder prediction 1 70 - -
Spst2g02552 626 CDD SEC14 152 321 IPR001251 -
Spst2g02552 626 Gene3D - 140 350 IPR036865 -
Spst2g02552 626 Gene3D - 73 139 - -
Spst2g02552 626 MobiDBLite consensus disorder prediction 16 42 - -
Spst2g02552 626 MobiDBLite consensus disorder prediction 49 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02552 Spst-Chr2 25217612 25222294 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02552 85 317 Acyl Lipid Metabolism Gene Families AT5G47730 26.316 4.37e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02552 K26544 - gmx:100785793 1073.54