Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02550 ATGATTGTGATTCACTTCATTCGTTGTGCAGGATTTTTGAGTCCTATGATGGCAGGTGATTCTTTTGTGATTTCCAATGGCAATGGCAACGGCAAGTCAGAGCCTCCTCCACGGAGGACATACCAAGCAGTAGTGATTGCAACCAGAGATATGGGCATTTCTAAGAATGGAAAATTGCCCTGGAAATTACCCACTGATCTCAAATTTTTTGATGAAATCACTAGTATAACGTCTGATCCGGGGAAGAAGAATGCCGTTGTGATGGGTAGAAAAACATGGGAGAGTATCCCTCCTGAGAATAGGCCTTTTCCTGGTCGCCTTAATGTTGTTCTGACTCGCTCGGGTAGCTTTGATATTGCGACAGCAGAGAATGTTGTCATATGTGGAAGTGTGTCTTCTGCTATGGAATTGTTGGCTGCTTCTCCATACTGTCTGTCAATTGAGAAAGTATTTCTTATTGGAGGTGGTGAGACATTCAGAGAGGCTCTTAATGCACCTGGATGTGAAGCTGCCCATATTACAGAAATCGAGGCTAGCATTGAATGTGACACTTTTATGCCTCGAGTTGATACCTCTCTTTTTCAGCCATGGTATTCATCATTCCCTTTGGTGGAAAACAACCTCCGCTATTCTTTCACCACTTATGTGCGTGTAAGGAGTAGTCCATCAGAGTCCCTGGATCAGAATGCTGATCCACTTTTTGATAATGATTCAGACTCTTCAAAATTTGAGGTCGATAAATTTTCTTTTCTTCCAAAAATGATTTATGAGAGACATGAGGAGTTTAAGTATCTAAGGTTGGTTCAAGAAATTATTTCTGAAGGCACAATGAAGGAAGATAGGACAGGGACTGGTACCTTGTCGAAATTTGGTTGCCAGATGAGGTTTAATCTGCGCAGAAACTTTCCGATTCTAACAACCAAGAAAGTATTTTGGCGAGGGGTTGTTGAAGAGCTTCTTTGGTTTATCAGCGGCTCAACAAGTGCCAAGGTGCTGCAGGAAAAAGGCATTCATATATGGGATGGCAATGCATCCAGAGAATACCTTGATAGTATTGGTTTGAGAGAAAGGGAGGAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTCGGAGCCAAGTATACTGACATGCATGCTGACTACTCTGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCTGATGATCGTCGGATCATTCTTTCAGCTTGGAATCCATCTGATCTTAAATTGATGGCACTTCCCCCCTGCCACATGTTTGCGCAGTTCTATGTAGCAAATGGGGAGTTATCGTGTCAAATGTATCAGCGATCTGCAGACATGGGCCTGGGAGTGCCATTTAATATTGCATCTTATGCTCTCCTGACGTGCATGATTGCTCATGTTTGTGACCTTGTTCCTGGCGATTTTATCCATGTTATTGGGGATGCGCATGTTTACCGTAATCATGTGAGACCTTTGCAGGAACAGCTTCAGAATCAACCAAAACCTTTTCCGATTTTGAAGATAAACCCAAAGAAGAAAGATATAGATTCTTTTGTTGCTACTGATTTCAAGCTAGTAGGATATGATCCTCACCAGAAGATAGCAATGAAGATGGCTGTTTAG 1635 0.4226 MIVIHFIRCAGFLSPMMAGDSFVISNGNGNGKSEPPPRRTYQAVVIATRDMGISKNGKLPWKLPTDLKFFDEITSITSDPGKKNAVVMGRKTWESIPPENRPFPGRLNVVLTRSGSFDIATAENVVICGSVSSAMELLAASPYCLSIEKVFLIGGGETFREALNAPGCEAAHITEIEASIECDTFMPRVDTSLFQPWYSSFPLVENNLRYSFTTYVRVRSSPSESLDQNADPLFDNDSDSSKFEVDKFSFLPKMIYERHEEFKYLRLVQEIISEGTMKEDRTGTGTLSKFGCQMRFNLRRNFPILTTKKVFWRGVVEELLWFISGSTSAKVLQEKGIHIWDGNASREYLDSIGLREREEGDLGPVYGFQWRHFGAKYTDMHADYSGQGFDQLLDVINKIKHNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFIHVIGDAHVYRNHVRPLQEQLQNQPKPFPILKINPKKKDIDSFVATDFKLVGYDPHQKIAMKMAV 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02550 544 SUPERFAMILY Dihydrofolate reductase-like 40 217 IPR024072 -
Spst2g02550 544 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 253 544 IPR036926 -
Spst2g02550 544 Hamap Thymidylate synthase [thyA]. 261 544 IPR000398 GO:0004799|GO:0006231
Spst2g02550 544 PRINTS Thymidylate synthase family signature 439 465 IPR000398 GO:0004799|GO:0006231
Spst2g02550 544 PRINTS Thymidylate synthase family signature 302 323 IPR000398 GO:0004799|GO:0006231
Spst2g02550 544 PRINTS Thymidylate synthase family signature 477 494 IPR000398 GO:0004799|GO:0006231
Spst2g02550 544 PRINTS Thymidylate synthase family signature 421 436 IPR000398 GO:0004799|GO:0006231
Spst2g02550 544 PRINTS Thymidylate synthase family signature 395 414 IPR000398 GO:0004799|GO:0006231
Spst2g02550 544 PANTHER THYMIDYLATE SYNTHASE 1 63 544 IPR045097 GO:0016741
Spst2g02550 544 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 40 217 IPR001796 GO:0004146|GO:0046654
Spst2g02550 544 FunFam Possible thymidylate synthase 255 544 - -
Spst2g02550 544 CDD DHFR 43 216 IPR001796 GO:0004146|GO:0046654
Spst2g02550 544 FunFam Bifunctional dihydrofolate reductase-thymidylate synthase 25 218 - -
Spst2g02550 544 NCBIfam thymidylate synthase 263 544 IPR000398 GO:0004799|GO:0006231
Spst2g02550 544 CDD TS_Pyrimidine_HMase 264 497 IPR023451 -
Spst2g02550 544 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 249 544 IPR036926 -
Spst2g02550 544 ProSitePatterns Thymidylate synthase active site. 406 434 IPR020940 GO:0004799|GO:0006231
Spst2g02550 544 Pfam Dihydrofolate reductase 42 217 IPR001796 GO:0004146|GO:0046654
Spst2g02550 544 Gene3D Dihydrofolate Reductase, subunit A 21 219 IPR024072 -
Spst2g02550 544 PIRSF DHFR-TS 24 544 IPR012262 GO:0004146|GO:0004799|GO:0006730
Spst2g02550 544 Pfam Thymidylate synthase 263 544 IPR023451 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02550 Spst-Chr2 25198734 25202594 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02550 K13998 - gmx:100786311 1007.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02550 2 25198734 25202594 Spst2g02550 2 25198734 25202594 ECH