LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst2g02546	ATGGAAGATTCCAGAGTTGGAACCATGGATTTGCATGAGTGTGCTGATAAGCTTCTCCAATTGCCAATCACTCAGCAAGCCTTGGCACGAGAATGTAGCAACAAATGTGTTGATGAACTATTAGATGGATCTGTGAAGATCTTGGATATTTGTGGTACAATTAAAGATTGCTTACGGCAACAAAAGGAAAGCATGAATGAACTCGAGTCAGCTATTCGCAGGAGAAGAGATGCTGAAGCTGGATTCACCATTGAGAGTGGGAGATACTTGTCTTCCAGGAAACAGATAAAGAAAGCAATTCGAAAGGCCTTGGATTTGCATGACTATGCTGCTAAGTTGCTTCAGTTGCCCACTACCCAACAAGCCTTTGCCCTAGAATACAGTGACAAGTGCGTTGATGTTCTATTAGAAAGGTCCCTGAGGCTCCTGGATATCTGTAGTACAGCCCAAGATTGTCTCTTGCAATCAAAGGAAAGCATTCACATGGTTCAGTCTGTTATTCGAAGAAAGGGTGCTGACACTGGATTCACAGTTGAGGGTGGAAAATACTTGGCATATAGGAAGAGGATGGAGAAGTTTCCTGTGTTGCGAGCAGTTGCTGTTTTGTACAATAGTTCATCTATAACTGCAACTGATTTATACGATTCCAGTTATGGAACTGGTGATTTGAATTTAAGACAAAAACTAACTGATCTCCAGACTTTGCATGATTGTATTGAAAAGCTGGTTCTACTGCCTCTTACTCAAGAAGTCCTAGTCCAAGAGCGTCAAGAGAAGTGGGTAGATGAGCTTTTAGATGGATCTTTAAGTGTCCTAGATGTATGTACTGCGGCAAAGGATGCTTTGCTTCACACAAAGGAATGTGCGCGCGAACTTCAATCAATTATGAGAAGAAAAAGGGGAGGTGAAATGGAGGTGTCAGCTGAGCTTATATGGTTATCAGACAAGATCTCCATGCTTTGGGAGGAAGTTACCAATGAACAACAAGTCTTAGCACGAGAATGCAATGATAAGTGGGTTGATGACCTACTAGAAGGGTTTCTTAGACTCTTGGATATTTGTGGTGCAGCTAAATATTGGCTTCGGCAATCAGAGGATATCATGTGCGACTTAAAGTCAGTCATTCCTAGAAAGAAAGCTTCTGACTCGAGTGAGGGCAATGAGGTGTCGGAACAAGTTTGTGGCTTTGCTGAGCTGGCTTGGAGCTTGCCTCAAGCTGGCCTGCCCACTCCAAGTTGGGAGTTGAACCATGGGAACTGTGCGAAGGCATTGATCTCCTGGTTCCTAGACAAGAGGGCACCGCGTCAGGCTGGTTTCACAGAGCAGCGAATACCTCTGGCTCTTGACAGTGGAGGGATTACAGGCTGCTGCACGTCCAATCCTCTAGCTTGGAGAACTGTGCGAAGGCATTGGTCTCGTGGTTCCCAGACAGAGGCACCGCGTGAGGCTGGCTACACAGTGCAGCGAACACCTCTGGCTCTTGACAGTGGAGGGATCACAGGCTGCTGCACTTCCAATCCGATGAGCTTGTACTGGGGTACAAATAGTTTTGCAAAAGCAATTGAAAAATGGCCATCTGTTGTTCTCTACAACCTCTTTAGGACCATTCATAATGACTGA	1620	0.4512	MEDSRVGTMDLHECADKLLQLPITQQALARECSNKCVDELLDGSVKILDICGTIKDCLRQQKESMNELESAIRRRRDAEAGFTIESGRYLSSRKQIKKAIRKALDLHDYAAKLLQLPTTQQAFALEYSDKCVDVLLERSLRLLDICSTAQDCLLQSKESIHMVQSVIRRKGADTGFTVEGGKYLAYRKRMEKFPVLRAVAVLYNSSSITATDLYDSSYGTGDLNLRQKLTDLQTLHDCIEKLVLLPLTQEVLVQERQEKWVDELLDGSLSVLDVCTAAKDALLHTKECARELQSIMRRKRGGEMEVSAELIWLSDKISMLWEEVTNEQQVLARECNDKWVDDLLEGFLRLLDICGAAKYWLRQSEDIMCDLKSVIPRKKASDSSEGNEVSEQVCGFAELAWSLPQAGLPTPSWELNHGNCAKALISWFLDKRAPRQAGFTEQRIPLALDSGGITGCCTSNPLAWRTVRRHWSRGSQTEAPREAGYTVQRTPLALDSGGITGCCTSNPMSLYWGTNSFAKAIEKWPSVVLYNLFRTIHND	539

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst2g02546	539	PANTHER	OS06G0725500 PROTEIN	9	104	-	-
	Spst2g02546	539	AntiFam	Overlaps SRP RNA, same strand	477	509	-	-
	Spst2g02546	539	AntiFam	Overlaps SRP RNA, same strand	406	461	-	-
	Spst2g02546	539	Coils	Coil	58	78	-	-
	Spst2g02546	539	Pfam	Protein BPS1	10	104	IPR004320	GO:0048364\|GO:0048367
	Spst2g02546	539	Pfam	Protein BPS1	228	309	IPR004320	GO:0048364\|GO:0048367
	Spst2g02546	539	Pfam	Protein BPS1	105	192	IPR004320	GO:0048364\|GO:0048367
	Spst2g02546	539	Pfam	Protein BPS1	325	391	IPR004320	GO:0048364\|GO:0048367

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst2g02546	Spst-Chr2	25138766	25155033	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst2g02546	-		-	gmx:102662897	166.392