Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02510 ATGCCTTCGCGAAGAAGAACTCTATTGAAGGTCATCATTCTCGGTGACAGCGGGGTGGGGAAGACGTCTTTGATGAACCAATATGTGAATAAAAAGTTTAGTAATCAGTACAAGGCAACCATTGGAGCGGATTTTTTGACCAAAGAAGTGCAATTCGAAGATAGGCTTTTCACCTTACAGATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTCTATCGAGGTGCTGATTGTTGTGTTCTAGTATATGATGTTAATTCAATGAAATCATTTGACAACCTTAACAACTGGAGGGAAGAATTTCTGATTCAAGCAAGTCCGTCCGATCCAGAGAATTTTCCTTTTGTTGTCATAGGAAACAAAATAGATATTGATGGTGGGAACAGCAGAGTGGTGTCAGAAAAGAAGGCTCGAGCTTGGTGTGCATCCAAAGGAAATATTCCATACTTTGAGACATCTGCCAAAGAAGGTATTAATGTGGAAGAAGCATTCCAATGCATAGCAAAGAATGCCCTGAAAAGTGGAGAAGAAGAAGAATTATACCTGCCAGACACAATTGATGTCGGAAACAGCAGTCAACCACGGGCAACAGGTATTGCTTTGGTGATCGACCCTCAACATACTAGAGTTTGCGAGAAGTTCTTGGTTATCTCTCAAGGTATTGAAGCTACCGACCGACCAATATATAACCTTGGTTTGCTTCAAATCATGGCGAGCAAATTTTCCGACCCCTGTAATTCAAACAATAAGGGCCTGAAACATATTCTAGATTAA 789 0.4106 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEELYLPDTIDVGNSSQPRATGIALVIDPQHTRVCEKFLVISQGIEATDRPIYNLGLLQIMASKFSDPCNSNNKGLKHILD 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02510 262 SMART rho_sub_3 11 179 IPR001806 GO:0003924|GO:0005525
Spst2g02510 262 NCBIfam small GTP-binding protein domain 9 172 IPR005225 GO:0005525
Spst2g02510 262 PANTHER RAB FAMILY 1 199 - -
Spst2g02510 262 CDD Rab7 9 182 - -
Spst2g02510 262 SMART rab_sub_5 9 179 - -
Spst2g02510 262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 182 IPR027417 -
Spst2g02510 262 PRINTS Transforming protein P21 ras signature 116 129 - -
Spst2g02510 262 PRINTS Transforming protein P21 ras signature 50 72 - -
Spst2g02510 262 PRINTS Transforming protein P21 ras signature 9 30 - -
Spst2g02510 262 PRINTS Transforming protein P21 ras signature 32 48 - -
Spst2g02510 262 PRINTS Transforming protein P21 ras signature 154 176 - -
Spst2g02510 262 ProSiteProfiles small GTPase Rab1 family profile. 3 223 - -
Spst2g02510 262 SMART ras_sub_4 6 179 - -
Spst2g02510 262 Pfam Ras family 10 177 IPR001806 GO:0003924|GO:0005525
Spst2g02510 262 FunFam Ras-related protein Rab7 1 189 - -
Spst2g02510 262 ProSiteProfiles small GTPase Rho family profile. 2 180 - -
Spst2g02510 262 SMART ran_sub_2 14 236 - -
Spst2g02510 262 Gene3D - 2 188 IPR027417 -
Spst2g02510 262 ProSiteProfiles small GTPase Ras family profile. 3 242 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02510 Spst-Chr2 24718092 24721752 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02510 K07897 - gmx:100305642 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02510 2 24718092 24721752 Spst2g02510 2 24718092 24721752 ECH