Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02491 ATGGACATTGATTTCGAACACTACCAGTTACGCTGCGAGCTTCGTGGCCACGAAGACGATGTTCGCGGAATATGCTTGTGCGGCAGCGAGGGCATAGCGACATCGTCGAGGGACCAGACGGTCAGGTTGTGGTCTCTGGACAGCAACCAGAAGTTCGTGAGTTCCAAGATTCTGGTGGGGCACACGAGCTTTGTGGGACCCTTGGCGTGGATTCCCCCGAATTCGGAATTTCCGCGTGGTGGGGTTGTGTCTGGCGGCATGGACACTCTGGTCTTCGTCTGGGACTTGAACACTGGTGAGAAGGTTTACACTCTTAAGGGCCATCAGTTGCAGGTCACTGGCATTGCGTTTGATGAAGGGGATGTTGTGTCCTCTTCTGTTGATTGTACCTTAAGACGGTGGAGGAATGGGAAATCTGTGGAGACGTGGGAGGCTCATAAGGCACCAGTCCAAGCTGTTGTAAAGCTGCCATCAGGAGAGCTTGTTACTGGGTCAACTGACACTACTTTAAAGCTTTGGAGAGGAAAAACTTGTTCACATACCTTTGAAGGACATACAGATACGGTTCGTGGCTTGTCTGTGATGTCTGGACTTGGAATCCTGTCTGCATCCCATGATGGTTCTCTCAGATTATGGGCAGTAAATGGTGAAGTGTTAATGGAGATGGTCGGTCATACTGCTATTGTTTATTCAGTTGATTCACATGCTTCAGGACTTATTGTCAGTGGTAGCGAAGATTGTTTTGCCAAAGTTTGGAAAGATGGAGTTTGTGTTCAGAGCATAGAACATCCTGGTTGCGTTTGGGATGCAAAGTTTATGGAAAATGGGGATATTGTGACAGCATGTTCAGATGGAGTTGTACGCATTTGGACCGTAGATCAGAAGAATGTTGCTGACCAGTTAGAGATTGATTTATACACTTCACAACTTTCTAGGGTTGGAGGATTGAAATTAGAAGAGTTACCAGGCTTGGAGGCACTGAAGATCCCAGGAACAACTGATGGCCAGACAAAGGTAGTCAGAGAGGGGGATAATGGGGTGGCATATGGATGGAACATGAGAGAACATAAGTGGGATAAAATTGGTGAAGTTGTTGATGGACCTGAGGAATCAAATCGCCAACTTTTTGATGGTATTCAGTATGATTATGTTTTTGATGTGGATATTGGTGATGGTATGCCTATCCGGAAGCTGCCGTACAATCGATCAGATAATCCATATGATGTTGCTGATAAATGGCTACTCAAGGAGAGTCTTCCACTTTCTTTTCGTGAGCAAATTGTACAGTTCATTCTTCAAAATACTGGACAAAACAATGTTAATTTTGACACTTCATTTCGTGATCCCTATACTGGCTCCCATGCTTACGTACCAGGACAACCTTCTCATTTGTCTGACATTTCTGCGAAACCTACTTTCAAGCATATTCCTAAGAAAGGGATGCTTGTTTTTGATGCAGCTCAGTTTGACGGGATCCTTAAAAAGATTACTGAGTTCAATAATACGTTACAATCTGACCAGGAAAAGCAGAACTTGTCTTTGACTGAGCTCAATGTTTCCAGACTGGGTGCCATTGTTAAAATTCTGAAAGATACTTCTCATTATCATTCTAGTACATTTGCAGACTCTGATATAGACTTGTTAACGAATCTGCTTCGGTCATGGCCTGTTGCAATGATATTTCCTGTCATTGATATCGTAAGGATGATAGTTCTTCATCCAGATGGGGCTATTTTACTTCACAAGCATTTTGAAGCAGAAAACGACATACTAATGGAAGTGATTAAGAAAGTCACCGTAAATTCCACAATTCCTGCAAATCTGTTGACCAGCATTCGTGCTGTAACTAATCTATTCAGGAATGCACGTTACTACAACTGGTTGCAGAAGCATCGTAGTGAGGTACTTGATGCTTTCTCATGTTGTAGTTCATCTCCAAACAAAAATTTGCAGTTGGCATACTCTACCTTGTTACTAAATTATGCTGTGCTATTGATTGAATCAAAGGATCAAGAAGGTCAATCTCAAGTTCTATCAGCAGCTCTTGAGCTTGCTGAGGATGAAAATGTAGAAGTTGATTCCAAATTTCGTGCTTTAGTTGCTGTTGGATCTCTGATGCTTGAGGGTCTTGTCAGAAAAATAGCTCTGGATTTTGATGTTTTGAACATTGCAAAAGCAGCCAAGGGTTCTAAGGATGCCAAGATTGCTGAAGTCGGATCTGACATTGAGCTGTTAACAACGCAGAGCTGA 2250 0.4316 MDIDFEHYQLRCELRGHEDDVRGICLCGSEGIATSSRDQTVRLWSLDSNQKFVSSKILVGHTSFVGPLAWIPPNSEFPRGGVVSGGMDTLVFVWDLNTGEKVYTLKGHQLQVTGIAFDEGDVVSSSVDCTLRRWRNGKSVETWEAHKAPVQAVVKLPSGELVTGSTDTTLKLWRGKTCSHTFEGHTDTVRGLSVMSGLGILSASHDGSLRLWAVNGEVLMEMVGHTAIVYSVDSHASGLIVSGSEDCFAKVWKDGVCVQSIEHPGCVWDAKFMENGDIVTACSDGVVRIWTVDQKNVADQLEIDLYTSQLSRVGGLKLEELPGLEALKIPGTTDGQTKVVREGDNGVAYGWNMREHKWDKIGEVVDGPEESNRQLFDGIQYDYVFDVDIGDGMPIRKLPYNRSDNPYDVADKWLLKESLPLSFREQIVQFILQNTGQNNVNFDTSFRDPYTGSHAYVPGQPSHLSDISAKPTFKHIPKKGMLVFDAAQFDGILKKITEFNNTLQSDQEKQNLSLTELNVSRLGAIVKILKDTSHYHSSTFADSDIDLLTNLLRSWPVAMIFPVIDIVRMIVLHPDGAILLHKHFEAENDILMEVIKKVTVNSTIPANLLTSIRAVTNLFRNARYYNWLQKHRSEVLDAFSCCSSSPNKNLQLAYSTLLLNYAVLLIESKDQEGQSQVLSAALELAEDENVEVDSKFRALVAVGSLMLEGLVRKIALDFDVLNIAKAAKGSKDAKIAEVGSDIELLTTQS 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02491 749 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
Spst2g02491 749 PRINTS G protein beta WD-40 repeat signature 200 214 IPR020472 -
Spst2g02491 749 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Spst2g02491 749 ProSiteProfiles Trp-Asp (WD) repeats profile. 182 212 IPR001680 GO:0005515
Spst2g02491 749 ProSitePatterns Trp-Asp (WD) repeats signature. 82 96 IPR019775 -
Spst2g02491 749 Pfam WD domain, G-beta repeat 12 45 IPR001680 GO:0005515
Spst2g02491 749 Pfam WD domain, G-beta repeat 99 134 IPR001680 GO:0005515
Spst2g02491 749 Pfam WD domain, G-beta repeat 138 173 IPR001680 GO:0005515
Spst2g02491 749 Pfam WD domain, G-beta repeat 218 253 IPR001680 GO:0005515
Spst2g02491 749 Pfam WD domain, G-beta repeat 177 212 IPR001680 GO:0005515
Spst2g02491 749 Pfam WD domain, G-beta repeat 256 290 IPR001680 GO:0005515
Spst2g02491 749 Pfam PFU (PLAA family ubiquitin binding) 330 438 IPR015155 -
Spst2g02491 749 CDD WD40 10 290 - -
Spst2g02491 749 SMART WD40_4 215 253 IPR001680 GO:0005515
Spst2g02491 749 SMART WD40_4 7 45 IPR001680 GO:0005515
Spst2g02491 749 SMART WD40_4 175 213 IPR001680 GO:0005515
Spst2g02491 749 SMART WD40_4 136 174 IPR001680 GO:0005515
Spst2g02491 749 SMART WD40_4 254 291 IPR001680 GO:0005515
Spst2g02491 749 SMART WD40_4 98 135 IPR001680 GO:0005515
Spst2g02491 749 SMART WD40_4 51 95 IPR001680 GO:0005515
Spst2g02491 749 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 14 50 - -
Spst2g02491 749 Pfam PUL domain 476 741 IPR013535 -
Spst2g02491 749 Gene3D - 4 308 IPR015943 GO:0005515
Spst2g02491 749 ProSiteProfiles Trp-Asp (WD) repeats profile. 14 54 IPR001680 GO:0005515
Spst2g02491 749 FunFam Transducin family protein / WD-40 repeat family protein 369 443 - -
Spst2g02491 749 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 104 IPR001680 GO:0005515
Spst2g02491 749 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 173 IPR001680 GO:0005515
Spst2g02491 749 SUPERFAMILY WD40 repeat-like 5 306 IPR036322 GO:0005515
Spst2g02491 749 Gene3D - 368 443 IPR038122 -
Spst2g02491 749 ProSiteProfiles PUL domain profile. 474 745 IPR013535 -
Spst2g02491 749 ProSiteProfiles PFU domain profile. 350 445 IPR015155 -
Spst2g02491 749 PANTHER PHOSPHOLIPASE A-2-ACTIVATING PROTEIN 7 703 - -
Spst2g02491 749 FunFam Phospholipase A-2-activating protein isoform A 474 746 - -
Spst2g02491 749 FunFam Polyubiquitin binding protein (Doa1/Ufd3) 4 310 - -
Spst2g02491 749 Gene3D - 474 745 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02491 Spst-Chr2 24492889 24503180 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02491 1 748 Acyl Lipid Metabolism Gene Families AT3G18860 69.525 0.0 1129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02491 K14018 - gmx:100816481 1384.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02491 2 24492889 24503180 Spst2g02491 2 24492889 24503180 ECH