Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02474 ATGGCGATTCAAGTCCTTAAACAGTTATCCCAAACACTGAGACCGAAACCTTGGCCTCTGTTGTTCTTCTCTTCTTCTTGTTCAAACGATGATTCAGAGAGTTTAGTAACAAACGTTGTTACAATCCTCACCCATCACCGTTCCAAGTCACGTTGGAGCAATCTCCGATCGGCGTGCCCCAACGGCATAGAACCCCTAGAGTTTTCCCAAATCACCCTCCACCTCAAGAACAAACCCCAACTCGCCCTTCGCTTCTTCCTCTGGACCAAATCCAAATCACTCTGCCACCACAACCTCGCCTCTTACTCCTCCATCATCCACCTCCTCGCACGTGCACGCCTATCCTCACACGCTTACCAACTCATGCGAACCGCCATTCGCACTTCCTACCTAACCGACGACCAAAATGGTCGTTTCGCCTCCCCGCCTCTGAAGCTCTTCGAAACCCTCGTCAAGACCTACCGAGATTGTGGCTCCGCTCCCTTCGTCTTCGATTTGTTGATCAAGGCGTGTTTGGATTCCAGAAAGGTTGACCCTTCTATTGAGATCGTTAGAATGTTGCTCTCTCGCGGGATTAGCCCTAAAGTTAGCACCTTGAATTCTTTGATTTCCGGGGTTTGTAATAGTCAAGGAGTGGATGCAGGGTATGCGATTTACCGCGAGTTCTTTCGATTGGATGAGGAAAAAAATGAAATTTCGAGAAGGGGTTGTGGTTTAAGAGTAACCCCCAATGTCCATACTTATAACGAGTTGATGTTGTGCTGTTACCAAGATGGTTTGGTGGAAAGGATGGAGGAACTTTGGCATGAAATGAGTTGTAACTGTAAGCCCAATGCTTATAGCTTTAGTGTGTTGATGGCTTTTTTTTGCGAGGAAGGGAGGATGGGGGATGCAGAAAAATTGTGGGAAGAAATGAGAAATGAGGAAATAGAGCCCGATGTTGTTAGTTATAATACTATTATAGGTGGCTTTTGCAAGATTGGAGATGTTGCTAGGGCTGAAGAGTTCTTCAGGGAAATGGCATTGGCTGGTGTTGAGACTACTGCTTCAACTTATGAGCATCTTGTGAAAGGATATTGCAGTGTTGGGGATGTTGATTCGGCTGTTCTGGTTTATAAGGATATGTCTAGGAGGGATTTAAAGCCTGATACTTCAACCATTGACTTGATGGTTAGGTTGCTTTGTGATAAGGGTAGGGTTCAGGAAGCTCTGGAGTTTGTGAGGTGCGCAGTTAGTAAATTTGATTTGATTCCAAGGGAAAAGAGTTATGCGGCCTTGATAAGGGGGTTGTGTTTTGAGCGGAGCATGGAAGAAGCGTTGAAGCTTCAGGCAGAGATGGTAGGAAAAGGTTTCCAACCGAATTCTGAAATATATGGTGCTTTTATTGATGGATACATTAGACAAGGGAACGAGGAAATGGCAGGAGCTTTGCGTAAAGAAATGCTCCAAAATGAGACGCAGAGCTAA 1467 0.4554 MAIQVLKQLSQTLRPKPWPLLFFSSSCSNDDSESLVTNVVTILTHHRSKSRWSNLRSACPNGIEPLEFSQITLHLKNKPQLALRFFLWTKSKSLCHHNLASYSSIIHLLARARLSSHAYQLMRTAIRTSYLTDDQNGRFASPPLKLFETLVKTYRDCGSAPFVFDLLIKACLDSRKVDPSIEIVRMLLSRGISPKVSTLNSLISGVCNSQGVDAGYAIYREFFRLDEEKNEISRRGCGLRVTPNVHTYNELMLCCYQDGLVERMEELWHEMSCNCKPNAYSFSVLMAFFCEEGRMGDAEKLWEEMRNEEIEPDVVSYNTIIGGFCKIGDVARAEEFFREMALAGVETTASTYEHLVKGYCSVGDVDSAVLVYKDMSRRDLKPDTSTIDLMVRLLCDKGRVQEALEFVRCAVSKFDLIPREKSYAALIRGLCFERSMEEALKLQAEMVGKGFQPNSEIYGAFIDGYIRQGNEEMAGALRKEMLQNETQS 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02474 488 Gene3D Tetratricopeptide repeat domain 240 342 IPR011990 GO:0005515
Spst2g02474 488 Gene3D Tetratricopeptide repeat domain 70 227 IPR011990 GO:0005515
Spst2g02474 488 Gene3D Tetratricopeptide repeat domain 343 409 IPR011990 GO:0005515
Spst2g02474 488 Gene3D Tetratricopeptide repeat domain 410 487 IPR011990 GO:0005515
Spst2g02474 488 NCBIfam pentatricopeptide repeat 246 278 IPR002885 -
Spst2g02474 488 NCBIfam pentatricopeptide repeat 351 384 IPR002885 -
Spst2g02474 488 NCBIfam pentatricopeptide repeat 422 454 IPR002885 -
Spst2g02474 488 NCBIfam pentatricopeptide repeat 315 346 IPR002885 -
Spst2g02474 488 NCBIfam pentatricopeptide repeat 280 314 IPR002885 -
Spst2g02474 488 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 46 408 - -
Spst2g02474 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 419 453 IPR002885 -
Spst2g02474 488 Pfam PPR repeat family 351 395 IPR002885 -
Spst2g02474 488 Pfam PPR repeat family 243 290 IPR002885 -
Spst2g02474 488 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Spst2g02474 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 347 IPR002885 -
Spst2g02474 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Spst2g02474 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 278 312 IPR002885 -
Spst2g02474 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 382 IPR002885 -
Spst2g02474 488 Pfam PPR repeat 310 340 IPR002885 -
Spst2g02474 488 Pfam PPR repeat 457 484 IPR002885 -
Spst2g02474 488 Pfam PPR repeat 422 451 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02474 163 485 Miscellaneous Gene Families AT4G11690 27.134 5.59e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02474 - - gmx:100809831 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02474 2 24370727 24372193 Spst2g02474 2 24370727 24372193 ECH