Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02466 ATGCACATAAATACACATAACACCTTTCATAGACCTAAGTATGATGTCTTGTTGCGTTCCGAACCCTCCTCGTTTAACTCTTCCAACAACGACGATGATGATTTCAATCATAATCGCCACAGTACCTATGTCGATAGCAGCAATGCCTCTCCTTGCACTATGTCCCCATGGAACTTCCAACCCAATACATCTTCTCCTCTCAGTAAGTCTCCATGGTTATTATCCACCTCACCTGCGACAAACCTCTTCAGCGAACACCAACAGTACCATGAAGACGATCTCCCCGTAAATGGCCTCATCGGATCCCTCGTCCGTGAAACGGGTCACATATATTCCTTGGCCGTTTCCGGAGACTTGTTATACACCGGCTCTGACAGCAAGAACATAAGAGTTTGGAAGCATCTCAAGGATTTCACTGGTTTCAAATCAAGTAGTGGATTGGTCAAAACCATAGTAATCTCCGGTGGCAAAATTTTCACCGGCCATCAAGACGGGAAGATCAGAGTGTGGAAAGTTTCGTCCAAGAATCCAAGCAACCACAAACGCATAGGGAGCTTGCCTACGTTCAAAGAATTCGTTAAGAGTTCCATGAACCCAAAGAACTACATGGAGGTTCGACGGAACCGAAATGCGGTGAAGGTGAAACACGTTGACGCCATTTCATGTTTGAGCCTAGACAAGGAGGAAGGGTTATTGTACTCTGGGTCGTGGGACAAGACGCTGAAGGTGTGGCGTGTGGCAGATTCAAAATGCTTGGATTCGATCAAAGCACACGAAGATGCAGTGAATGCGGTGGTGGTGGGGTCTAGAGGATGCGTGTTGACGGGGTCCGCAGATGGGACTGTGAAGGTATGGAAGAGGGTGAGCGAGGAGAAAGGGGAGAAGGGAGAGAAGGGGGAGAAGGGAAAGAAGGCAAAGCATGTGTTGGAACGGATTTTGTTGAAGCAGGAGAATGCGGTTACAGCATTGGCGGTGAATGATACGGCAACGGTGGTTTACTGCGGTTCTTCTGATGGGTTAGTGAACTTTTGGGAGCATCAGAAGAATGAGTACTCACATGGTGACGTTTTGAGGGGGCACAAGCTTGCCGTGCTCTGCCTCGCAGCAGCGGGGAACCTCGTCTTCAGTGGGTCTGCAGATAAGAACGTGTGTGTGTGGAAGCGCGATGAGAATGGGTTCCACACATGCCATTCAGTTCTGACAGGCCACAAGGGTCCCGTTAAGTGTATTGCGGTGGAGGAGGAGCACCCGCAACTGGAGAAGCAAATCAAAAGGGAACAACGATGGGTTGTGTACACTGGGAGCTTGGACAAGTCGGTGAAGGTGTGGCGCGTCTCTGAACATGCACCAGAGGTGAGTACGTTCCAAACCTTGGTTACTCCCAGTCATGCTGGCTCGCTCTATGATTCCTCTTCAGGAGCATTTAGCTACTCCTCACCGAGAACAATGAGTGTTAATTCTTCCATGACAGAAGTGAGTGTTAATGCTTCCATGACAGATATGAGCTATTCCTCCCCGCGAAACACCAATGATTGCGGTGAAATTGAGCAGCATAGTAACAACAATATTGATGTCTCTAAGAGAACTTTCAATGACAACAACAAGAACCGTGATACTGCTAAAAACAATGGCCAAGGCAACAAGGATGACACTAAAAGCAATGGTGATGGTCTCAAATATATTGATGGCACTATATATAGTGACTATGGGCATAGCAAACAAAGAGGTGGTGGTATCACTGAAAATAAAGACTTTGGTGACAATAGTCGCAGTGCTAAAAGCATTGACAATTGCAACAACAATCATAACGATGGCGATGATAGTAGCAATTGCAACAGCCATAACATCCATACAGGTAAAAACATTGACATTGGCAAAAACTGTAACACTGGTATGGGTAAAAGCATTGGCATTAGTAGCAACAACAGTAACATTGATCCTGGTAAAAACATTGTCAATGACAAAATTACTAAAATCAAAGACAATGGGAACAACAACTACAACAATGATAGCACTAAAACTGCTGGCAACAATGGCAATAACAACAAATATCAGAAGAGTGTTAGAACTAGAACTAGTATGTATGGAAACAACAATAGCAACAGTAACAGTTCTAAGAGCGGTGGTGCTAAAAGCGGTGACAATTGTGATGATTCTAATGCCAAGGATATCCACAACAATTATGACGCTAAAATAGATGGCAATGGTAACAACATAAGCAACAATCATGGTGGTTCTAATGGAAACAACATCCACAAATTTGATGACACGAAAAGAGTTGACAATGAAATCAACATAAGCAACAACAACCACCATCGTGATAATGCTTATGGCAAAAGCTTCTGTAACAAGGATGATACAAAAAACAATGACATAGGTGAACACTCGGACAATTATGATAATTTTAAGACTGTTGGAAACATCAACAAATATAGTCATCGTGCTTGTGACAATAACACTCGCAATAATAGTGATGATAATAGTGGTGAAAAAGACAACAACACATGCATGAGTCGTGATTATGCTAATGAGAATAACATTTGCAACAGTGGTAGTGGTAAAAGTGGTTACGATACTGAGTATAACATTCGCAACAATGGTTGTGCTAAGAGCAAGGACAACATCAGCAACAATCGTAATGGTACGTATAACAGCAACCATGATGATACTCTTGGAAATAACATTTGCAACAATGAAGGTGCCAAAGGTAAGAGCAATAGATGCTATGATAACAAAAATAGTTCTAAGAGCAATGGCAACGACAACAACAATCGTGACTTCATTAACATTCGCAATAAGGATGATGCTAAGAATACTTGCCATGGAAGTTACAGTGGCAACACTGATAATTCAAAGGGTAGTGACACTGACAGTAATCACAATAATGACCATGATGATGCTCATGTCAATGGCAACAACATCCACAACAATGGTGGTTCCAAGAGTGATGAAACCGTTAGAAAAACATGGAAGAATTATATTTCTAAGAGAGGTGGTAATGCTAACAACAACCGCAAGAGTGAGGGTGCTTCTGAAAATGTGAATAACATTCGCAATCCCAGTGCTGGTAAAAACAATAATAATGAATCCAACGGCTCCAACAATGATAATGTTGATGGTCGCAAAATCAATAGTCTTAGTGCTAAAATCAATAGTTGCAACGACAACGGTTTTAGTGTTAAAAACAATTCCAATAGCAACGTTAACGACACAAACAATCCCTTCCAAAAAAATAGCAATGATGTTGGTGACTACAGAAACAAGAACGAGAGATACTTGCAAAGTAGAAATCAATAG 3297 0.4243 MHINTHNTFHRPKYDVLLRSEPSSFNSSNNDDDDFNHNRHSTYVDSSNASPCTMSPWNFQPNTSSPLSKSPWLLSTSPATNLFSEHQQYHEDDLPVNGLIGSLVRETGHIYSLAVSGDLLYTGSDSKNIRVWKHLKDFTGFKSSSGLVKTIVISGGKIFTGHQDGKIRVWKVSSKNPSNHKRIGSLPTFKEFVKSSMNPKNYMEVRRNRNAVKVKHVDAISCLSLDKEEGLLYSGSWDKTLKVWRVADSKCLDSIKAHEDAVNAVVVGSRGCVLTGSADGTVKVWKRVSEEKGEKGEKGEKGKKAKHVLERILLKQENAVTALAVNDTATVVYCGSSDGLVNFWEHQKNEYSHGDVLRGHKLAVLCLAAAGNLVFSGSADKNVCVWKRDENGFHTCHSVLTGHKGPVKCIAVEEEHPQLEKQIKREQRWVVYTGSLDKSVKVWRVSEHAPEVSTFQTLVTPSHAGSLYDSSSGAFSYSSPRTMSVNSSMTEVSVNASMTDMSYSSPRNTNDCGEIEQHSNNNIDVSKRTFNDNNKNRDTAKNNGQGNKDDTKSNGDGLKYIDGTIYSDYGHSKQRGGGITENKDFGDNSRSAKSIDNCNNNHNDGDDSSNCNSHNIHTGKNIDIGKNCNTGMGKSIGISSNNSNIDPGKNIVNDKITKIKDNGNNNYNNDSTKTAGNNGNNNKYQKSVRTRTSMYGNNNSNSNSSKSGGAKSGDNCDDSNAKDIHNNYDAKIDGNGNNISNNHGGSNGNNIHKFDDTKRVDNEINISNNNHHRDNAYGKSFCNKDDTKNNDIGEHSDNYDNFKTVGNINKYSHRACDNNTRNNSDDNSGEKDNNTCMSRDYANENNICNSGSGKSGYDTEYNIRNNGCAKSKDNISNNRNGTYNSNHDDTLGNNICNNEGAKGKSNRCYDNKNSSKSNGNDNNNRDFINIRNKDDAKNTCHGSYSGNTDNSKGSDTDSNHNNDHDDAHVNGNNIHNNGGSKSDETVRKTWKNYISKRGGNANNNRKSEGASENVNNIRNPSAGKNNNNESNGSNNDNVDGRKINSLSAKINSCNDNGFSVKNNSNSNVNDTNNPFQKNSNDVGDYRNKNERYLQSRNQ 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02466 1098 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 42 449 IPR045182 -
Spst2g02466 1098 MobiDBLite consensus disorder prediction 1057 1087 - -
Spst2g02466 1098 Gene3D - 298 535 IPR015943 GO:0005515
Spst2g02466 1098 SUPERFAMILY WD40 repeat-like 102 452 IPR036322 GO:0005515
Spst2g02466 1098 MobiDBLite consensus disorder prediction 1057 1082 - -
Spst2g02466 1098 SMART WD40_4 350 387 IPR001680 GO:0005515
Spst2g02466 1098 SMART WD40_4 248 286 IPR001680 GO:0005515
Spst2g02466 1098 SMART WD40_4 96 133 IPR001680 GO:0005515
Spst2g02466 1098 SMART WD40_4 134 171 IPR001680 GO:0005515
Spst2g02466 1098 SMART WD40_4 306 345 IPR001680 GO:0005515
Spst2g02466 1098 SMART WD40_4 207 245 IPR001680 GO:0005515
Spst2g02466 1098 SMART WD40_4 393 444 IPR001680 GO:0005515
Spst2g02466 1098 Pfam WD domain, G-beta repeat 105 133 IPR001680 GO:0005515
Spst2g02466 1098 Pfam WD domain, G-beta repeat 396 443 IPR001680 GO:0005515
Spst2g02466 1098 MobiDBLite consensus disorder prediction 813 836 - -
Spst2g02466 1098 Pfam Neurobeachin beta propeller domain 220 386 IPR046851 -
Spst2g02466 1098 Gene3D - 205 297 IPR015943 GO:0005515
Spst2g02466 1098 FunFam BnaA09g28200D protein 203 290 - -
Spst2g02466 1098 ProSiteProfiles Trp-Asp (WD) repeats profile. 357 387 IPR001680 GO:0005515
Spst2g02466 1098 MobiDBLite consensus disorder prediction 956 970 - -
Spst2g02466 1098 MobiDBLite consensus disorder prediction 500 601 - -
Spst2g02466 1098 MobiDBLite consensus disorder prediction 536 551 - -
Spst2g02466 1098 MobiDBLite consensus disorder prediction 902 1041 - -
Spst2g02466 1098 MobiDBLite consensus disorder prediction 939 955 - -
Spst2g02466 1098 CDD WD40 107 444 - -
Spst2g02466 1098 Gene3D - 93 200 IPR015943 GO:0005515
Spst2g02466 1098 PRINTS G protein beta WD-40 repeat signature 431 445 IPR020472 -
Spst2g02466 1098 PRINTS G protein beta WD-40 repeat signature 232 246 IPR020472 -
Spst2g02466 1098 PRINTS G protein beta WD-40 repeat signature 273 287 IPR020472 -
Spst2g02466 1098 ProSiteProfiles Trp-Asp (WD) repeats profile. 213 254 IPR001680 GO:0005515
Spst2g02466 1098 MobiDBLite consensus disorder prediction 995 1041 - -
Spst2g02466 1098 MobiDBLite consensus disorder prediction 731 751 - -
Spst2g02466 1098 MobiDBLite consensus disorder prediction 659 714 - -
Spst2g02466 1098 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 255 286 - -
Spst2g02466 1098 ProSiteProfiles Trp-Asp (WD) repeats profile. 255 286 IPR001680 GO:0005515
Spst2g02466 1098 MobiDBLite consensus disorder prediction 659 754 - -
Spst2g02466 1098 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 345 IPR001680 GO:0005515
Spst2g02466 1098 MobiDBLite consensus disorder prediction 500 529 - -
Spst2g02466 1098 MobiDBLite consensus disorder prediction 20 49 - -
Spst2g02466 1098 MobiDBLite consensus disorder prediction 868 890 - -
Spst2g02466 1098 MobiDBLite consensus disorder prediction 907 926 - -
Spst2g02466 1098 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 213 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02466 Spst-Chr2 24314122 24317418 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02466 214 458 Miscellaneous Gene Families AT5G08390 23.695 3.77e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02466 - - gmx:100807706 842.417