Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02464 ATGTTGGTGGAGCGAAATATACACAACGCCTTGCACAGACCCAAATTTGGAGCATTATTGCACTCCGAAGCCACCTCGCATTACACCTCCAACAACGACGACGATAACTTCCAACAAAACCGCCACAGCAACGCCAGCCACAGAAACTACACCGATAGCAGCGACAATGCCTCTCCCTGCACCATGTCCCCATGGAGCTACCCACCCGATTCTTCATCTCCTCTCAACAAGTCTCCGTGGTTATTAGCCACCTCTCCCGCCATTAACCTCTTCCAACACCACCAAGACGACCTTCCCGGAAACAGCCTCATCGGATCCCTCGTGCGCGAGGAGGGTCACATATATTCCTTGGCCGTTTCAGGGGACTTGTTATACACAGGCTCCGACAGCAAGAACATTAGAGTGTGGAAGCATCTCAAGGACTACACTGGCTTCAAATCAAGAAGTGGATTGGTCAAAACCATAATAATCTCAGGCGGAAAAATCTTCACCGGCCACCAAGACGGGAAGATCAGAGTGTGGAAGGTCTCGTCCAAGGATCCAACCAAGCATAAACGCGTTGGGAGCTTGCCAACGTTCAAACAGTACGTGAAGTCTTCCGTGAACCCGAGGAACTACGTGGAGGTTCGGCGGAACCGGAACGCGGTGAAGGTGAAGCACTTCGACGCCGTTTCGTGTCTGAGCCTGGACAACGAGGAAGGGTTGCTGTACTCCGGATCGTGGGACAAGACGCTCAAGGTGTGGCGCGTGGCGGATTACAAGTGTTTGGATTCGATTAACGCGCACGACGATGCGGTGAACGCGGTGGTGACGGCGTCCGGAGGTTACGTGTTTACGGGCTCCGCGGATGGGACGGTGAAGGTGTGGAGGAGGGTGAGCGATGAGAAGGGGAAGAAGCCAAAACACGTGTTGGACCGGATTTTGCTGAGGCAGGAGAACGCGGTTACGGCGCTGGCGGTGAACCGTACGGCCACGGTGGTTTATTGCGGTTCCTCTGATGGGATGGTGAATTTCTGGGAGCGTGACGAGAAGGGAGGGTTCTCGCACGGCGGCGTCTTGAGGGGGCACAAGCAAGCCGTGCTCTGCCTGGCCGCGGCGGGGAACCTTCTCTTCAGTGGATCTGCGGATAAGAACGTGTGCGTGTGGAAGCGCGATGAGAATGGGTTCCATGCCTGCCATTCGGTTCTGACGGGTCACATGGGTCCTGTTAAGTGTATCGCCGTGGAGGAGGATCGGGCGCAACCGGAGAAGCCTCGCCAGAAAGGGGATCAACGGTGGATTGTGTACACCGGGAGCTTGGACAAGTCGGTGAAGGTGTGGCGCGTGTCCGAACACGCGCCGGATTTGAGCATGTTCGAAACCTGGGCCACTCCTAATCATACCACATAA 1389 0.5558 MLVERNIHNALHRPKFGALLHSEATSHYTSNNDDDNFQQNRHSNASHRNYTDSSDNASPCTMSPWSYPPDSSSPLNKSPWLLATSPAINLFQHHQDDLPGNSLIGSLVREEGHIYSLAVSGDLLYTGSDSKNIRVWKHLKDYTGFKSRSGLVKTIIISGGKIFTGHQDGKIRVWKVSSKDPTKHKRVGSLPTFKQYVKSSVNPRNYVEVRRNRNAVKVKHFDAVSCLSLDNEEGLLYSGSWDKTLKVWRVADYKCLDSINAHDDAVNAVVTASGGYVFTGSADGTVKVWRRVSDEKGKKPKHVLDRILLRQENAVTALAVNRTATVVYCGSSDGMVNFWERDEKGGFSHGGVLRGHKQAVLCLAAAGNLLFSGSADKNVCVWKRDENGFHACHSVLTGHMGPVKCIAVEEDRAQPEKPRQKGDQRWIVYTGSLDKSVKVWRVSEHAPDLSMFETWATPNHTT 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02464 462 Gene3D - 80 211 IPR015943 GO:0005515
Spst2g02464 462 FunFam BnaA09g28200D protein 207 294 - -
Spst2g02464 462 Gene3D - 299 455 IPR015943 GO:0005515
Spst2g02464 462 Pfam WD domain, G-beta repeat 111 137 IPR001680 GO:0005515
Spst2g02464 462 Pfam WD domain, G-beta repeat 392 440 IPR001680 GO:0005515
Spst2g02464 462 Pfam WD domain, G-beta repeat 351 383 IPR001680 GO:0005515
Spst2g02464 462 Pfam WD domain, G-beta repeat 220 248 IPR001680 GO:0005515
Spst2g02464 462 Pfam WD domain, G-beta repeat 254 289 IPR001680 GO:0005515
Spst2g02464 462 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 42 446 IPR045182 -
Spst2g02464 462 Gene3D - 212 298 IPR015943 GO:0005515
Spst2g02464 462 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 217 250 - -
Spst2g02464 462 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 289 IPR001680 GO:0005515
Spst2g02464 462 ProSiteProfiles Trp-Asp (WD) repeats profile. 353 383 IPR001680 GO:0005515
Spst2g02464 462 CDD WD40 111 441 - -
Spst2g02464 462 ProSiteProfiles Trp-Asp (WD) repeats profile. 308 340 IPR001680 GO:0005515
Spst2g02464 462 SMART WD40_4 252 290 IPR001680 GO:0005515
Spst2g02464 462 SMART WD40_4 138 175 IPR001680 GO:0005515
Spst2g02464 462 SMART WD40_4 214 249 IPR001680 GO:0005515
Spst2g02464 462 SMART WD40_4 100 137 IPR001680 GO:0005515
Spst2g02464 462 SMART WD40_4 346 383 IPR001680 GO:0005515
Spst2g02464 462 SMART WD40_4 301 340 IPR001680 GO:0005515
Spst2g02464 462 SMART WD40_4 389 441 IPR001680 GO:0005515
Spst2g02464 462 MobiDBLite consensus disorder prediction 27 68 - -
Spst2g02464 462 ProSiteProfiles Trp-Asp (WD) repeats profile. 217 258 IPR001680 GO:0005515
Spst2g02464 462 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 289 - -
Spst2g02464 462 SUPERFAMILY WD40 repeat-like 101 450 IPR036322 GO:0005515
Spst2g02464 462 PRINTS G protein beta WD-40 repeat signature 277 291 IPR020472 -
Spst2g02464 462 PRINTS G protein beta WD-40 repeat signature 236 250 IPR020472 -
Spst2g02464 462 PRINTS G protein beta WD-40 repeat signature 428 442 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02464 Spst-Chr2 24309048 24310436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02464 218 453 Miscellaneous Gene Families AT5G08390 25.000 1.78e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02464 - - gmx:100807706 738.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02464 2 24309048 24310436 Spst2g02464 2 24309048 24310436 ECH