Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02446 ATGGCCGTCAACGACACCGATCAATCCAATAGGCCTCACAGGGACCGTCAATCCGGTGCCAAATCCGCCAAGAAGAAGAGTAAGAAGAAGCAGAAACAGGATGCGGGAGGAGAGGATCATAAAAACCAAAACCCTAAGGCATTTGCCTTCTCTTCCTCCAATAAAGCCAAGCGGTTGCAATCACGCGCCGTCGAGAAAGAGCAGCGCCGCCTTCACGCTCCCATCATTGACCGCTCCTACGGCGAGCCTGCTCCATACGTTGTCGTCGTGCAGGGTCCTCCTCAGGTTGGCAAGTCACTGTTGATTAAATCTTTGGTTAAGCATTACACGAAGCATAATTTGCCTGATGTTCGAGGTCCAATTACTATTGTGTCAGGGAAGCAAAGGAGGGTGCAGTTTGTGGAATGTCCTAATGATATCAATGGCATGATAGATGCAGCGAAGTTTGCCGATCTAGCGCTTCTTCTCATAGATGGAAGTTATGGTTTTGAAATGGAAACATTTGAGTTCCTAAATATATTGCAAGTTCATGGGTTCCCGAAGGTAATGGGGGTTCTCACCCATCTCGACAAATTCAAGGATGTGAAAAAGTTGAGGAAAACAAAACAACGACTCAAACATCGGTTTTGGACTGAGATATATGATGGTGCTAAACTATTTTACTTATCCGGCCTTATTCATGGAAAGTATGTTAAGCGCGAAGTTCACAATCTTGCTCGATTTATTTCAGTCATGAAGTTTCATCCTTTATCTTGGCGAACTACCCACCCTTATGTCTTGGCTGATCGTTTTGAAGATATCACTCCTCCTGAAAAAGTGCATGCAAATAATAAATGTGACAGAAAAGTCACCCTTTATGGTTATCTTAGAGGATGTAATTTGAAAAAGGGCAATAAGGTACACATAGCAGGAGTGGGTGATTATAGTTTAACTGGTATTACTGTTTTACCAGATCCTTGTCCTCTTCCATCTGCTGCAAAAAAGAAAGGACTGCGGGATAAGGAAAAATTATTCTATGCTCCCATGTCAGGACTTGGGGATCTTTTGTACGACAAAGATGCTGTATACATAAATATTAATGACCACCTTGTTCAATTCTCAAATGTTGATAATGAAAACTCTGCTATGACAAGCAAAGGAAAGGACAGAGATGTAGGAGAGGTTTTGGTGAAATCACTACAGAATACCAAATACTCGATTAATGAAAAGCTTGAGAACAGCTTTATCAGTCTCTTCAGTGAAAAGCCTAAAGTGTCATCAGAAGCTCTAGCTGATGCACATGGCACAAACAATGATGTAGAACAGAATGATGCTGTTATAATTGGTGAAGATAATAACACAAAGGATTTGGATGGTTCAGAATCATCTGATCAGGATGAAGAGGGCACCATGAAAGACAGTGAAGCGTCTGGTTCTGACGAGGAAGATTCCCCAAATAGTAATGCTTTGAGTGGAGACCACATACAAGAACATATTGAGTTTCATGATGGAAGACGAAGGCGAAGAGCAATATTTGGAAATGATAATGATCAAAGTGATCTGATGGATTCAGAAGGAGACGAGGATGGTGCTGCCAGTGATGATCTTGCATCTTCTGATTCAGAATCTTCGGAAGATGAGGAAGACCATAATGATAATGATGACACAAATGAAGATGGCATGGGTAATGTTTCCAAGTGGAAAGAGTCTTTAGCAGAAAGAACTCTCTCACGGAAAACTCCTAGCTTGATGCAAATTGTGTATGGGGAATCTACTATTGATTCAATCACTACAGACACAGAGAATGGTAATAGTGGAGATGAGGAAAGTGATGATGACTTTTTTAAGCCCATAGAAGAAGTGAAAAAGCAAAACATTAGAGATGGATTGAATGATGACGGAGTAGTCAACACTGAGGATTGTTCCAAGTGTACCCAATTTGTGCATCAGAGATGGGATGAGGAGATGATTCGAAACCGCTTTGTGTCTGGCAATTTGGCAAAAGCTGCACTCAGAAATGCATTGCAAACAGCTAATACTGAAGAGGAAAATGATGATGTCTATGGTGACTTTGAAGATTTGGAAACAGGAGAAAAACATGAGAACTATCAGACAGATGATGCTCTTGCAGCAACAAAACTTAAGGAAGATGTTTCTGAAGCTGAGGAGCGGAGACTTAAGAAAATTGCTCTCCATGCAAAATTTACAGTAACTACTATATATTGTTACCTTAATTTTTTATTTACATTTGACGGTGACTCTGGGTCAGCAGAGGAAGACTCTGGTAAGGAAAATGGACACAAGGTCCATCGTGGTCAACCTAATGAAAGTACCTATTTTGACAAGTTGAAGGAGGAGATTGAACTCCAGAAACAAAGGAATATAGCTGAACTCAATGATCTTGATGAAGATACCCGATTGGAGATAGAAGGCTTCCGAACAGGAACATACCTAAGATTGGAGGTTAATGATGTTCCTTGTGAGATGGTTGAATACTTTGATCCCTACCATCCAATATTGATCGGAGGGGTTGGTATAGGGGAGGATAATGTTGGATATATGCAGACGAGGTTAAAGCGGCATAGGTGGCACAAGAAAGTTTTGAAGACTAGAGATCCAATTATTGTATCTGTTGGATGGAGGCGTTACCAGACAACTCCAGTTTACGCCATTGAGGATAGTAATGGAAGGCATCGTATGCTAAAGTACACTCCAGAACACATGCATTGCCTTGCTATGTTTTGGGGACCTCTTGCTCCTCCCAACACTGGGGTTGTAGCCGTTCAGAATTTATCAAACAATCAGGCAACATTTAGGATTACTGCCACTGCAGTTGTTCTTGAGTTTAATCATGCAGCAAGGATAGTGAAGAAAATCAAATTGGTTGGTTATCCATGCAAAATATTCAAGAAGACAGCACTTATCAAGGATATGTTTACTTCAGATCTTGAAGTAGCTAGATTTGAAGGTGCAGCTATTCGAACAGTCAGTGGGATTAGGGGGCAGGTCAAGAAGGTTGCAAAAGTAGAGATAGGTAATCAAGCACAAAGGAAGGGTGGGCAAATTAAAGAAGGAATTGCTAGGTGCACTTTTGAAGATAAAATCCTGATGAGTGACATTGTTTTCCTGCGGGCATGGACTCAAGTTGAAGTTCCTCAGTTTTATAATCCATTGACAACTGCATTGCAGCCTCGTGAAAGGACCTGGAAAGGAATGAGAACCGTTGCAGAATTGAGAAGAGAAAACAATCTTCCTGTTCCTGTAAATAAAGATTCACTTTACAAGAAAATTGAAAGAAAACCTAGAAAGTTCAATCCATTGGTGATTCCCAAGTCTCTTCAAGCAAGTCTTCCTTTTGCATCAAAACCCAAGGACATACCCAAGCGGAAGAAGCCCTTACTCGAAGAAAGAAGGGGAAGAGGTGTTGTCATGGAACCTCGAGAGCGCAAAGTTCATGCTCTTGTTCAACACCTCCAGTTAATAAATAGTGAGAAGATGAAAAAACGAAAGCTTAAGGAAGATAAGAAAAGGAAAGAACTTGAAGCAGAGAGAGCAAAAGATGAGCAATTGTCGAGAAAGCGCCGGAGAGAGGAAAGGCGTGTGAAATACCGGGCACAAGACAAGCAGAATAAGAAAATTCGTAGAACAGAGGTTTGA 3636 0.412 MAVNDTDQSNRPHRDRQSGAKSAKKKSKKKQKQDAGGEDHKNQNPKAFAFSSSNKAKRLQSRAVEKEQRRLHAPIIDRSYGEPAPYVVVVQGPPQVGKSLLIKSLVKHYTKHNLPDVRGPITIVSGKQRRVQFVECPNDINGMIDAAKFADLALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYVKREVHNLARFISVMKFHPLSWRTTHPYVLADRFEDITPPEKVHANNKCDRKVTLYGYLRGCNLKKGNKVHIAGVGDYSLTGITVLPDPCPLPSAAKKKGLRDKEKLFYAPMSGLGDLLYDKDAVYININDHLVQFSNVDNENSAMTSKGKDRDVGEVLVKSLQNTKYSINEKLENSFISLFSEKPKVSSEALADAHGTNNDVEQNDAVIIGEDNNTKDLDGSESSDQDEEGTMKDSEASGSDEEDSPNSNALSGDHIQEHIEFHDGRRRRRAIFGNDNDQSDLMDSEGDEDGAASDDLASSDSESSEDEEDHNDNDDTNEDGMGNVSKWKESLAERTLSRKTPSLMQIVYGESTIDSITTDTENGNSGDEESDDDFFKPIEEVKKQNIRDGLNDDGVVNTEDCSKCTQFVHQRWDEEMIRNRFVSGNLAKAALRNALQTANTEEENDDVYGDFEDLETGEKHENYQTDDALAATKLKEDVSEAEERRLKKIALHAKFTVTTIYCYLNFLFTFDGDSGSAEEDSGKENGHKVHRGQPNESTYFDKLKEEIELQKQRNIAELNDLDEDTRLEIEGFRTGTYLRLEVNDVPCEMVEYFDPYHPILIGGVGIGEDNVGYMQTRLKRHRWHKKVLKTRDPIIVSVGWRRYQTTPVYAIEDSNGRHRMLKYTPEHMHCLAMFWGPLAPPNTGVVAVQNLSNNQATFRITATAVVLEFNHAARIVKKIKLVGYPCKIFKKTALIKDMFTSDLEVARFEGAAIRTVSGIRGQVKKVAKVEIGNQAQRKGGQIKEGIARCTFEDKILMSDIVFLRAWTQVEVPQFYNPLTTALQPRERTWKGMRTVAELRRENNLPVPVNKDSLYKKIERKPRKFNPLVIPKSLQASLPFASKPKDIPKRKKPLLEERRGRGVVMEPRERKVHALVQHLQLINSEKMKKRKLKEDKKRKELEAERAKDEQLSRKRRREERRVKYRAQDKQNKKIRRTEV 1211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02446 1211 MobiDBLite consensus disorder prediction 488 507 - -
Spst2g02446 1211 SMART DUF663_2 708 1042 IPR007034 -
Spst2g02446 1211 MobiDBLite consensus disorder prediction 749 768 - -
Spst2g02446 1211 Gene3D - 86 248 IPR027417 -
Spst2g02446 1211 Coils Coil 1154 1193 - -
Spst2g02446 1211 FunFam BMS1 ribosome biogenesis factor 86 248 - -
Spst2g02446 1211 Coils Coil 777 797 - -
Spst2g02446 1211 MobiDBLite consensus disorder prediction 748 768 - -
Spst2g02446 1211 MobiDBLite consensus disorder prediction 513 548 - -
Spst2g02446 1211 MobiDBLite consensus disorder prediction 587 608 - -
Spst2g02446 1211 SMART aarp2cn2 234 320 IPR012948 GO:0005634|GO:0042254
Spst2g02446 1211 Pfam AARP2CN (NUC121) domain 234 319 IPR012948 GO:0005634|GO:0042254
Spst2g02446 1211 CDD BMS1 47 276 IPR037875 GO:0005525
Spst2g02446 1211 MobiDBLite consensus disorder prediction 1 68 - -
Spst2g02446 1211 MobiDBLite consensus disorder prediction 447 472 - -
Spst2g02446 1211 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 758 1043 IPR007034 -
Spst2g02446 1211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 221 IPR027417 -
Spst2g02446 1211 MobiDBLite consensus disorder prediction 1158 1211 - -
Spst2g02446 1211 ProSiteProfiles Bms1-type guanine nucleotide-binding (G) domain profile. 84 248 IPR030387 -
Spst2g02446 1211 MobiDBLite consensus disorder prediction 442 557 - -
Spst2g02446 1211 PANTHER RIBOSOME BIOGENESIS PROTEIN 6 1193 IPR039761 GO:0042254
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02446 Spst-Chr2 24103418 24110909 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02446 K14569 - gmx:100792176 1980.68