Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02437 ATGGCCAATGGCAGCACTACCCATCTCTTCAAGCTTTTCCTTTTCCTTCTGATTCTTCACTCTGCACTCGCTGAGGTTTTCTTCGAAGAGAGATTTGAAGATGGATGGAAGAGCCGTTGGGTGTTATCTGATTGGAAAAGGAGTGAGGGAAAAGCAGGCACCTTCAAGCACACAGCAGGGAAATGGCCTGGGGATCCTGATGACAAAGGTCTTCAGACATATAACGATGCCAAGCATTTTGCCATATCTGCAAAGATACCCGAGTTTAACAACAAGGACAGAACCCTTGTGGTGCAGTATTCCATTAGGTTTGAGCAGGACATTGAATGTGGTGGCGGTTACATCAAACTTCTTTCTGGTTATGTCAATCAGAAGAAGTTTGGTGGCGATACCCCTTATAGTCTGATGTTTGGACCAGATATATGTGGTACACAGACTAAGAAGCTCCATCTTATACTATCATACCAGGGGCAGAATTACCCTATTACAAAGGAACTGCAATGTGAAACGGATAAGTTGACTCATTTCTATACATTTATTCTAAGGCCTGATGCCTCTTATAGTATTCTTGTTGATAACCGGGAAAGAGATTCTGGAAGTATGTATACGGATTGGGACATCCTTCCTCCAAGGAAAATCAAGGATGTTAAAGCAAAAAAGCCAGCAGACTGGGATGACAGAGAGTACATTGAAGATCCTAATGATGTCAAACCAGAGGGATATGATTCAATTCCAGCTGAAATTCCTGATCCCAAAGCCAAGAAGCCTGCTGACTGGGATGATGAAGATGATGGACTATGGAAGGCCTCAAAAGTTCCTAATCCAGCATACAAAGGACCATGGAAACGCAAGAAAATCAAGAATCCCAACTACAAAGGAAAGTGGAAGATTCCATGGATTGATAACCCAGAATTCGAGGATGATCCTGATCTTTATGTTCTAAAGCCAATAAAGTATGTGGGCATTGAAGTGTGGCAGGTGAAGGCAGGTTCAGTTTACGACAACATCTTAATTTGTGATGACCCACAGTATGCAAAGCAAGCTGTGGATGACTTCATGGCTAATAATAGAGAGGCTGAGAAAGAAGCTTTTGAAGAAGCAGAAAAAGAAAGAAGGGCTCGGGAAGAAGAGGAGGCACGGAGAGCAAGAGAAGAGGGTGAAAAAAGGAGGAAGGAGAGGGATCAGAAATATGGAAATAGGAGGCGTCGAAGGCCGGATCCCCACGATGTGGCTGATTACCATGATGAACTTTGA 1254 0.4338 MANGSTTHLFKLFLFLLILHSALAEVFFEERFEDGWKSRWVLSDWKRSEGKAGTFKHTAGKWPGDPDDKGLQTYNDAKHFAISAKIPEFNNKDRTLVVQYSIRFEQDIECGGGYIKLLSGYVNQKKFGGDTPYSLMFGPDICGTQTKKLHLILSYQGQNYPITKELQCETDKLTHFYTFILRPDASYSILVDNRERDSGSMYTDWDILPPRKIKDVKAKKPADWDDREYIEDPNDVKPEGYDSIPAEIPDPKAKKPADWDDEDDGLWKASKVPNPAYKGPWKRKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPQYAKQAVDDFMANNREAEKEAFEEAEKERRAREEEEARRAREEGEKRRKERDQKYGNRRRRRPDPHDVADYHDEL 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02437 417 PIRSF Calreticulin 5 415 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Spst2g02437 417 ProSitePatterns Calreticulin family signature 2. 135 143 IPR018124 GO:0005509
Spst2g02437 417 Gene3D Calreticulin/calnexin, P domain 210 311 IPR009033 GO:0005509|GO:0005515
Spst2g02437 417 Coils Coil 356 394 - -
Spst2g02437 417 PANTHER CALRETICULIN AND CALNEXIN 11 385 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Spst2g02437 417 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 223 IPR013320 -
Spst2g02437 417 FunFam Calreticulin 210 311 - -
Spst2g02437 417 PRINTS Calreticulin signature 248 270 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Spst2g02437 417 PRINTS Calreticulin signature 105 123 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Spst2g02437 417 PRINTS Calreticulin signature 319 339 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Spst2g02437 417 PRINTS Calreticulin signature 220 233 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Spst2g02437 417 PRINTS Calreticulin signature 286 305 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Spst2g02437 417 PRINTS Calreticulin signature 131 147 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Spst2g02437 417 Pfam Calreticulin family 265 338 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Spst2g02437 417 Pfam Calreticulin family 29 263 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Spst2g02437 417 ProSitePatterns Calreticulin family signature 1. 103 118 IPR018124 GO:0005509
Spst2g02437 417 FunFam Calreticulin 1b 25 209 - -
Spst2g02437 417 MobiDBLite consensus disorder prediction 224 238 - -
Spst2g02437 417 Gene3D - 25 381 - -
Spst2g02437 417 MobiDBLite consensus disorder prediction 224 260 - -
Spst2g02437 417 MobiDBLite consensus disorder prediction 360 417 - -
Spst2g02437 417 SUPERFAMILY P-domain of calnexin/calreticulin 206 321 IPR009033 GO:0005509|GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02437 Spst-Chr2 24010079 24015729 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02437 8 346 Miscellaneous Gene Families AT5G61790 35.427 6.24e-66 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02437 K08057 - gmx:100802428 727.628