Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02405 ATGAAATGCAATTTAGCAGATATGGCATACAACAGATATTATTTTTATTTTCTTCTACCTCTCGTTGCTCTAGTTTCTTCATTGATTACTATTACAGAAGCTGTTGCTCTCACTCCAGAAATAGCTTTGTTGAATCGGAACAGTTTTCCACCTGGCTTCATCTTTGGGACAGCATCCTCAGCGTACCAGTATGAAGGTGCAGCAAATGAAGGTGGTAGAGGACCAAGTATTTGGGATACTTTCACTCATAAATATCCAGATAAGATAAAGGACAGAGACAGTGGAGATGTTGCCGTTGATTCTTATCATCGCTACAAGGAAGATGTTGGGATTATGAAGGATATGAATTTGGATGCCTACAGATTTTCCATATCTTGGTCTAGAATTCTTCCAAATGGAAAGCTAAGTGGAGGTATAAATAAAGAAGGAATTGACTATTACAACAACCTTATCAATGAGCTAGTGGAAAATGGTTTACAACCATTTGTGACTCTTTTTCATTGGGATCTTCCTCAATCTTTGGAAGATGAATATGGTGGCTTTTTAAGTCCTCGCATTGTGAAAGATTTCCAGGACTATGCAGAGCTTTGCTTCAAGGAATTTGGAGATAGAGTAAAAAATTGGATAACTTTGAATGAGCCATTGGCTTATAGCGAACAAGGTTATACAACAGGGGTAATGGCACCAGGTCGATGTTCTGCATGGTTGAATCCTAGTTGCAATGGTGGTGATTCTGGAATAGAACCCTATTTGGTCACCCATTACCAACTTCTTGCTCATGCAGCAGCTGTTAATGTGTACAAGACCAAATATCAGAAATTTCAAAATGGTTTCATAGGCATAATCTTGAATTTTATTTGGTCCCTGCCACTCTCGGAAAATAAACTTGATCAAAAGGCTACTGAACGAGCTATTGACTTCACATTTGGATGGTTTATGGATCCATTGACAAGAGGAGAATATCCAAAAAGCATGCGTTCTTTGGTGAAATCACGATTACCAAAGTTTACAGAGAAACAATGCAGATTACTTATTAATTCATTTGATTTTATTGGCTTAAACTACTACACTGCAAGATATGTCTCTGATGCACCTGAATTAAGAAATGTCAAAAATTACCTAACAGATTCCCTTGCAAATTTTTCTTTTGTGCGTGATGGAAAGGCTATTGGTCTAAATGTTGCTTCAGATTGGTTGTATGTTTATCCAAGAGGATTTCGTGACCTTTTGTTATACACTAAAGACAAATACAACAATCCTTTGATTTATATTACTGAAAATGGTATAAATGAGTATGATGATCCATCATTACCACTTGAAGAATCTCTCTTGGATATTTATAGGATTGATTATCATTATCGTCATCTTTATTATCTTGAGGAAGCAATTGGGAATGGTGTAAATGTAAAAGGGTATTTTGTATGGTCACTCTTAGACAATTTTGAATGGAACTCAGGCTACACTATGCGATTTGGAATGAATTTTATAGATTACAGAAATGACTTGAAAAGATACCCCAAACTTTCTGCTCTATGGTTCAAGGATTTTCTCAAAGCGGAATTCAAACTTCAAGATTCCATGAAATAG 1587 0.3617 MKCNLADMAYNRYYFYFLLPLVALVSSLITITEAVALTPEIALLNRNSFPPGFIFGTASSAYQYEGAANEGGRGPSIWDTFTHKYPDKIKDRDSGDVAVDSYHRYKEDVGIMKDMNLDAYRFSISWSRILPNGKLSGGINKEGIDYYNNLINELVENGLQPFVTLFHWDLPQSLEDEYGGFLSPRIVKDFQDYAELCFKEFGDRVKNWITLNEPLAYSEQGYTTGVMAPGRCSAWLNPSCNGGDSGIEPYLVTHYQLLAHAAAVNVYKTKYQKFQNGFIGIILNFIWSLPLSENKLDQKATERAIDFTFGWFMDPLTRGEYPKSMRSLVKSRLPKFTEKQCRLLINSFDFIGLNYYTARYVSDAPELRNVKNYLTDSLANFSFVRDGKAIGLNVASDWLYVYPRGFRDLLLYTKDKYNNPLIYITENGINEYDDPSLPLEESLLDIYRIDYHYRHLYYLEEAIGNGVNVKGYFVWSLLDNFEWNSGYTMRFGMNFIDYRNDLKRYPKLSALWFKDFLKAEFKLQDSMK 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02405 528 SUPERFAMILY (Trans)glycosidases 38 518 IPR017853 -
Spst2g02405 528 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 53 67 IPR033132 -
Spst2g02405 528 PANTHER GLYCOSYL HYDROLASE 48 520 IPR001360 GO:0004553|GO:0005975
Spst2g02405 528 Pfam Glycosyl hydrolase family 1 46 519 IPR001360 GO:0004553|GO:0005975
Spst2g02405 528 Gene3D Glycosidases 29 526 - -
Spst2g02405 528 ProSitePatterns Glycosyl hydrolases family 1 active site. 422 430 IPR018120 -
Spst2g02405 528 FunFam Beta-glucosidase 12 35 519 - -
Spst2g02405 528 PRINTS Glycosyl hydrolase family 1 signature 347 361 IPR001360 GO:0004553|GO:0005975
Spst2g02405 528 PRINTS Glycosyl hydrolase family 1 signature 466 483 IPR001360 GO:0004553|GO:0005975
Spst2g02405 528 PRINTS Glycosyl hydrolase family 1 signature 422 430 IPR001360 GO:0004553|GO:0005975
Spst2g02405 528 PRINTS Glycosyl hydrolase family 1 signature 490 502 IPR001360 GO:0004553|GO:0005975
Spst2g02405 528 PRINTS Glycosyl hydrolase family 1 signature 445 456 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02405 Spst-Chr2 23712717 23716274 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02405 12 517 Glycoside Hydrolase AT5G44640 53.846 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02405 K01188 - gmx:100792870 891.338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02405 2 23712717 23716274 Spst2g02405 2 23712717 23716274 ECH