Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02400 ATGCCATTCAACACCTCTTTCTTTCTGAGCCTCATTGCTCTTGTTCTTGTTAAAGTTACATGCGAAGAACCAGTTACAGTTTCACCTATTATTGACATTTCGCTCAATCGACATAGTTTCCCAGAAGGGTTCATCTTTGGAGCGGGATCTTCCTCCTACCAGTTCGAAGGTGCAGCAAGGGAAGGTGGTAGAGGAGCAAGTGTATGGGATACTTTCACCCATAGATATCCAGATAAGATCCAGGATAGAAGCAATGGGGACGTTGCCATTGACTCATATCACCACTACAAGGAAGATGTAGGGATGATGAAGAATATGAATTTGGATTCATATAGATTTTCCATATCTTGGTCAAGGATTCTCCCCAAAGGAAAGCTAAGTGGTGGAATAAATCAAGAAGGAATAAAGTATTACAACAACCTTATCAATGAGCTAGTGGCTAATGGTATAAAACCATTTGCGACTCTTTTCCATTGGGATCTTCCCCAAGCACTAGAAGATGAGTATGGTGGCTTTTTGAGTCCACTCATAGTGAAGGATTTTCGAGATTATGCAGAACTTTGCTTCAAGGAATTTGGTGATAGGGTGAAGTATTGGGTTACATTGAATGAGCCATGGAGTTACAGTCAAAATGGCTATGCAAATGGACAAATGGCACCAGGTCGTTGTTCTGATTGGATGAATTCAAATTGCACCGGTGGTGATTCTGCAACAGAGCCATATTTAGTTACTCATCACCAACTTCTTGCTCATGCAGCAACTGTTCGTGTCTACAAGACCAAGTATCAGACATCTCAAAAGGGTGTGATTGGCATAACCTTGGTAGCTAATTGGTTTTTGCCACTCAGAGATACCAAATCTGATCAAAAGGCTACTGAAAGAGCAATTGATTTCATGTATGGATGGTTTATGGATCCATTAACTTCCGGAGACTATCCAAAAAGTATGAGATCACTAGTGAAAACAAGACTGCCAAAGTTTACTACAGAGCAAGCCAAACTACTTGTTGGTTCATTTGATTTTATTGGTCTAAACTATTACTCTACAACATATGCCTCTGATGCACCTCATCTAAGCAATGCCAGACCTAGCTACTTAACCGATTCTCTTGCCATTCCTGCATATGAACGTGATGGAAAACCTATTGGAATAAAGATTGCTTCTGATTGGTTATATGTTTATCCCAGAGGAATTCGAGACCTTCTATTATATACCAAGGAAAAGTACAACAATCCTTTGATTTACATCACAGAAAATGGTGTGAATGAGTACAATGAACCAACTCTATCACTTGAAGAGTCTCTGATGGATACTTTCAGAATTGATTATCACTATCGTCATCTCTTTTATCTTCAATCTGCAATTAGGAATGGTGCAAATGTAAAGGGATATTATATATGGTCCTTCTTCGACAATTTTGAGTGGGCTTCTGGCTATACATCACGATTTGGAATGATCTTCGTAGATTATAAAAATGGCTTGAAAAGATATCCAAAACTCTCTTCAACGTGGTTCAAGAATTTTCTCAAGAAAGAAACCAAACTTTATGGCTCCAGTAAATAA 1563 0.389 MPFNTSFFLSLIALVLVKVTCEEPVTVSPIIDISLNRHSFPEGFIFGAGSSSYQFEGAAREGGRGASVWDTFTHRYPDKIQDRSNGDVAIDSYHHYKEDVGMMKNMNLDSYRFSISWSRILPKGKLSGGINQEGIKYYNNLINELVANGIKPFATLFHWDLPQALEDEYGGFLSPLIVKDFRDYAELCFKEFGDRVKYWVTLNEPWSYSQNGYANGQMAPGRCSDWMNSNCTGGDSATEPYLVTHHQLLAHAATVRVYKTKYQTSQKGVIGITLVANWFLPLRDTKSDQKATERAIDFMYGWFMDPLTSGDYPKSMRSLVKTRLPKFTTEQAKLLVGSFDFIGLNYYSTTYASDAPHLSNARPSYLTDSLAIPAYERDGKPIGIKIASDWLYVYPRGIRDLLLYTKEKYNNPLIYITENGVNEYNEPTLSLEESLMDTFRIDYHYRHLFYLQSAIRNGANVKGYYIWSFFDNFEWASGYTSRFGMIFVDYKNGLKRYPKLSSTWFKNFLKKETKLYGSSK 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02400 520 ProSitePatterns Glycosyl hydrolases family 1 active site. 414 422 IPR018120 -
Spst2g02400 520 SUPERFAMILY (Trans)glycosidases 34 510 IPR017853 -
Spst2g02400 520 Gene3D Glycosidases 27 511 - -
Spst2g02400 520 PRINTS Glycosyl hydrolase family 1 signature 338 352 IPR001360 GO:0004553|GO:0005975
Spst2g02400 520 PRINTS Glycosyl hydrolase family 1 signature 437 448 IPR001360 GO:0004553|GO:0005975
Spst2g02400 520 PRINTS Glycosyl hydrolase family 1 signature 482 494 IPR001360 GO:0004553|GO:0005975
Spst2g02400 520 PRINTS Glycosyl hydrolase family 1 signature 458 475 IPR001360 GO:0004553|GO:0005975
Spst2g02400 520 PRINTS Glycosyl hydrolase family 1 signature 414 422 IPR001360 GO:0004553|GO:0005975
Spst2g02400 520 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 44 58 IPR033132 -
Spst2g02400 520 PANTHER GLYCOSYL HYDROLASE 39 513 IPR001360 GO:0004553|GO:0005975
Spst2g02400 520 FunFam Beta-glucosidase 12 26 511 - -
Spst2g02400 520 Pfam Glycosyl hydrolase family 1 38 512 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02400 Spst-Chr2 23672084 23676087 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02400 8 514 Glycoside Hydrolase AT5G44640 54.331 0.0 586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02400 K01188 - gmx:100802250 966.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02400 2 23672084 23676087 Spst2g02400 2 23672084 23676087 ECH