Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02399 ATGATGTTTTCGTTGCTCTGCGTTTTGTCTCTTTTTGTGACCTCCTTCATCAACATCACTCATTCCAAGGCCGTTCTTGACGTTTCATTCCTCAACAGGAGCAGTTTTCCCCAAGGTTTTGTTTTCGGGACAGCATCCTCGGCATACCAGTATGAAGGTGCTGCAAGGGAAGGGAGAGTAAATGCAGTTGTTGTCACTCACTTGGCAAAAATTTCGGAACTTAGGAAGGACCTAAGTAGACAATTGTTAAGGAATGGAGGGAGGGAGATTCTACCGAAAGGAAAGCTTATTACAGGTGTAAACCATGCAGGAATAAACTATTACAACAACCTCATCAACGAGCTAATGGCTAATGGTCTACAACCATATGTGACCCTTTTTCATTGGGACGTTCCCCAAGCCTTAGAGGATGAGTATGGTGGTTTCTTAAGCCCTGACATTGTAGATGATTTTAGGGACTATGCTGAACTTTGCTTCAAGGAATTTGGTGACAGGGTAAAACATTGGATTACTTTGAATGAACCAAGGAGTGTGAGCAAGAATGGCTATGCAAATGGTAGGTTTGCGCCTGGTCGGTGTTCTGATTGGTTAAATCTGAACTGCACAGGCGGTGATTCCGGAACTGAGCCCTATTTGACTTCACACTACCAACTTCTTGCTCATGCTGCCGCTGCCAAACTGTATAAGACCAAGTATCAGGCATCTCAAAAGGGTTTAATAGGGATTACCTTGAATTCTGACTGGTATGTTCCGGTTTCAGAAGAGAAATCAGATCGAGATGCTGCACGTCGAGGCCTTGACTTCATGTTTGGATGGTTTATGGAACCACTCACAAAAGGTGAGTATCCAAAGAGCATGCGATCTATGTTGGGAAACCGGCTACCAGAGTTCACCAAAGAAGAGTCCAGGCAACTCAAAGGGTCATTTAATTTTCTAGGCCTAAACTACTACTCATCCTTCTATGCCGCCTATGCACCTCATCCACTTGGTGCCAGACCAGCCTTACAAACTGATTCTCTTGTTAATGTCACAAATGAGCATGATGGCAAGCTCCTTGGTCCAATGGCTGCTTCTAATTGGTTGTGCAATTATCCAAGAGGATTCCGGCAACTGTTGCTTTTCATCAAGAAGCAATACAACAACCCCGTAATTTACATTACTGAAAACGGTTATGACGAGTTCAATGATCCAACACTTTCACTTGAAGAAAGTCTTATAGATACATACAGAGTTGATTACTTATACCGTCATCTTTATTATCTTCAAACTGCAATCAAGGATGGTGTGAACGTAAAGGGATATTTTGTGTGGTCATTGCTGGATAACTTGGAGTGGGACTCTGGCTATACTGTGCGATTTGGACTCGTCTTTGTGGATTTCAAAGATGGTTTGAAACGCTACCCGAAACTCTCCGCACATTGGTTCAAGAATTTCCTTAGTTAA 1443 0.4297 MMFSLLCVLSLFVTSFINITHSKAVLDVSFLNRSSFPQGFVFGTASSAYQYEGAAREGRVNAVVVTHLAKISELRKDLSRQLLRNGGREILPKGKLITGVNHAGINYYNNLINELMANGLQPYVTLFHWDVPQALEDEYGGFLSPDIVDDFRDYAELCFKEFGDRVKHWITLNEPRSVSKNGYANGRFAPGRCSDWLNLNCTGGDSGTEPYLTSHYQLLAHAAAAKLYKTKYQASQKGLIGITLNSDWYVPVSEEKSDRDAARRGLDFMFGWFMEPLTKGEYPKSMRSMLGNRLPEFTKEESRQLKGSFNFLGLNYYSSFYAAYAPHPLGARPALQTDSLVNVTNEHDGKLLGPMAASNWLCNYPRGFRQLLLFIKKQYNNPVIYITENGYDEFNDPTLSLEESLIDTYRVDYLYRHLYYLQTAIKDGVNVKGYFVWSLLDNLEWDSGYTVRFGLVFVDFKDGLKRYPKLSAHWFKNFLS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02399 480 SUPERFAMILY (Trans)glycosidases 25 479 IPR017853 -
Spst2g02399 480 Gene3D Glycosidases 88 480 - -
Spst2g02399 480 Gene3D Glycosidases 15 81 - -
Spst2g02399 480 PANTHER GLYCOSYL HYDROLASE 90 479 IPR001360 GO:0004553|GO:0005975
Spst2g02399 480 Pfam Glycosyl hydrolase family 1 90 479 IPR001360 GO:0004553|GO:0005975
Spst2g02399 480 FunFam Beta-glucosidase 12 86 480 - -
Spst2g02399 480 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 40 54 IPR033132 -
Spst2g02399 480 PRINTS Glycosyl hydrolase family 1 signature 407 418 IPR001360 GO:0004553|GO:0005975
Spst2g02399 480 PRINTS Glycosyl hydrolase family 1 signature 308 322 IPR001360 GO:0004553|GO:0005975
Spst2g02399 480 PRINTS Glycosyl hydrolase family 1 signature 428 445 IPR001360 GO:0004553|GO:0005975
Spst2g02399 480 PRINTS Glycosyl hydrolase family 1 signature 384 392 IPR001360 GO:0004553|GO:0005975
Spst2g02399 480 PRINTS Glycosyl hydrolase family 1 signature 452 464 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02399 Spst-Chr2 23666230 23669857 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02399 3 480 Glycoside Hydrolase AT5G44640 49.407 5.04e-167 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02399 K01188 - gmx:100801874 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02399 2 23666230 23669857 Spst2g02399 2 23666230 23669857 ECH