Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02386 ATGCACCTATTGGATCTTAAAGAGTGTCTCGGATTACAATCTGTGGCATCGGCTGAGGAATCACCGCATCCGTTGATTCCCATCCTCATCAACGCTCATATTCCCGCGGTCATATCAAAATTTCGCAAACCTGAAATAACATTTGGAAAACTTCCCGCTCAACTTTTTTCGCAACGTGCTATAAATACCCTCCATCTCTCTTTCGAAATGGCTCGTACCAAGCAAACTGCAAGGAAGTCCACCGGAGGAAAGGCTCCGAGAAAGCAGCTTGCCACCAAGGCCGCTCGTAAGTCTGCTCCGGCCACCGGTGGTGTAAAGAAGCCCCATCGTTTCAGACCCGGGACAGTGGCTCTCAGGGAGATCCGCAAGTACCAGAAGAGTACAGAGCTTCTCATCAGGAAGCTTCCATTCCAGAGGCTGGTCAGGGAGATCGCTCAGGATTTCAAAACCGATCTCCGCTTCCAGAGCAGCGCCGTGTCCGCTCTGCAGGAAGCTGCTGAGGCCTACCTCGTTGGACTGTTTGAGGATACCAATCTCTGCGCTATTCATGCCAAGAGAGTCACTATTATGCCCAAAGACATTCAGCTCGCACGTAGAATTAGGGGTGAGAGAGCTTAG 618 0.5097 MHLLDLKECLGLQSVASAEESPHPLIPILINAHIPAVISKFRKPEITFGKLPAQLFSQRAINTLHLSFEMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02386 205 FunFam Histone H3.3 122 205 - -
Spst2g02386 205 Pfam Core histone H2A/H2B/H3/H4 70 201 IPR007125 GO:0003677
Spst2g02386 205 PRINTS Histone H3 signature 183 204 IPR000164 GO:0000786|GO:0003677|GO:0030527
Spst2g02386 205 PRINTS Histone H3 signature 149 167 IPR000164 GO:0000786|GO:0003677|GO:0030527
Spst2g02386 205 PRINTS Histone H3 signature 103 124 IPR000164 GO:0000786|GO:0003677|GO:0030527
Spst2g02386 205 PRINTS Histone H3 signature 127 144 IPR000164 GO:0000786|GO:0003677|GO:0030527
Spst2g02386 205 PRINTS Histone H3 signature 72 86 IPR000164 GO:0000786|GO:0003677|GO:0030527
Spst2g02386 205 PRINTS Histone H3 signature 86 100 IPR000164 GO:0000786|GO:0003677|GO:0030527
Spst2g02386 205 PRINTS Histone H3 signature 167 183 IPR000164 GO:0000786|GO:0003677|GO:0030527
Spst2g02386 205 SMART h35 103 205 IPR000164 GO:0000786|GO:0003677|GO:0030527
Spst2g02386 205 FunFam Histone H3 71 119 - -
Spst2g02386 205 ProSitePatterns Histone H3 signature 2. 136 144 IPR000164 GO:0000786|GO:0003677|GO:0030527
Spst2g02386 205 ProSitePatterns Histone H3 signature 1. 84 90 IPR000164 GO:0000786|GO:0003677|GO:0030527
Spst2g02386 205 SUPERFAMILY Histone-fold 71 202 IPR009072 GO:0046982
Spst2g02386 205 Gene3D Histone, subunit A 71 205 IPR009072 GO:0046982
Spst2g02386 205 PANTHER HISTONE H3 70 203 IPR000164 GO:0000786|GO:0003677|GO:0030527
Spst2g02386 205 MobiDBLite consensus disorder prediction 75 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02386 Spst-Chr2 23509243 23509934 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02386 K11253 - cpap:110811829 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00366 5 3038313 3038723 Spst2g02386 2 23509243 23509934 ECH
Spst2g02386 2 23509243 23509934 Spst2g02386 2 23509243 23509934 ECH
Spst5g00366 5 3038313 3038723 Spst2g02386 2 23509243 23509934 PCT