Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02358 ATGTTGAAGGTGGCCGTGCGATGGAATTGGAGGCCAACAGCTTCTCTGCCTCTAACTGCCTTCACATCCCAACATTTCCACTCGCTTAACCCTAGGCCACCATGTCGCACCTTCAGGCTTTTTTGTCGACCTTCTTCTTCCGCCGTTGCGGACACCGCGCCTCCTCTGTCCACCGACTTGCACCGCTACCTTCGCTGCTCCATGCCGCAGAATTCGCCGCTGCGAGTCGCGGTTCTCGTTAGCGGAGGGGTCGATAGCAGCGTCGCTCTCCGGCTTCTCCATGCCGCCGGCCATTCCTGCACCGCTTTCTACCTCAAGATATGGTTCCAAGAAGACTTCGAGAATTTTTGGTCTGAGTGTCCCTGGGAAGAGGATTTGAAGTATGCCAAAACTGTTTGTAATCAGGTTGATGTACCATTAGAAGTTGTTCATTTAACTGATGAATACTGGAACAATGTGGTTTCTTACCTCATTGAAGAGTATAGGAGTGGCCGAACTCCTAACCCGGATGTTCTTTGCAATACAAGAATAAAGTTTGGTGCATTCTTGGATGCTATTGGTGGCATGGGTTTTGACTATGTTGCCTCTGGGCATTATGCAAATGTTATCCACCCATGTGCTGATGGGATCAATGAGCCTTCTGTTTTAGAACTATCACAAGACATGGTAAAAGATCAAACATACTTCCTTTCACACCTCTCACAATCCCAGCTGAAGCGACTTCTTTTTCCGCTTGGTTGTATTCCCAAGGATGAAGTTCGCAGGCTTGCAACAAAATTTGATTTACCAAATAAGGACAGAAAGGATTCTCAAGGAATATGCTTTTTGGGCAAGATAAGATTCAGTGAATTTGTTGCAAGACATATTGGGGAAAGAGAAGGTATCATACTGGAGGCTGAGACAGGGGATTTCCTTGGCAAACATCGAGGATTCTGGTTTTATACTATTGGTCAACGTCAGGGTCTACGTCTACCTGGAGGTCCATGGTATGTTGTTGAGAAGGATGTTAAAAACAATGTAGTTTTTGTGTCAAGAAATTACTTTTCCTTTGACAAAAGGAGGCGTGTATTCCGTGTTGGCTCTTTTAAATGGCTTAGTGGGTTGCCCCCAGGCCAGACAAGTCATCTCCAATGCAAGGTGAGACACGGTCCTGGATTCTATGATTGTAGCTTAAAAATGAAAGTGGAAGGAGATGGCCAAGGTTACTCTGCTGTTGTCCGCATATCTGAAGATGATCAAGGCCTTGCAGCTGGGCAGTTTGCAGCTTTTTATGAGGGAAGAACATGCATAGGTTCTGGTGTGATTTTGGAGTTCTGGGATGATCAGAGTTTTCCAGTTTGTGCAAAAGCTTTAGAAATTGCTAGAATGGAAGATAAATCAATGCTTGGGAATCCAGTAAAAATAAAAGTTAAACCAGATAACCCGCAAGAAGTGTGTGATTCTGCAGAATTAGCAAGTGAAACATCATAA 1470 0.4497 MLKVAVRWNWRPTASLPLTAFTSQHFHSLNPRPPCRTFRLFCRPSSSAVADTAPPLSTDLHRYLRCSMPQNSPLRVAVLVSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPWEEDLKYAKTVCNQVDVPLEVVHLTDEYWNNVVSYLIEEYRSGRTPNPDVLCNTRIKFGAFLDAIGGMGFDYVASGHYANVIHPCADGINEPSVLELSQDMVKDQTYFLSHLSQSQLKRLLFPLGCIPKDEVRRLATKFDLPNKDRKDSQGICFLGKIRFSEFVARHIGEREGIILEAETGDFLGKHRGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYFSFDKRRRVFRVGSFKWLSGLPPGQTSHLQCKVRHGPGFYDCSLKMKVEGDGQGYSAVVRISEDDQGLAAGQFAAFYEGRTCIGSGVILEFWDDQSFPVCAKALEIARMEDKSMLGNPVKIKVKPDNPQEVCDSAELASETS 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02358 489 FunFam tRNA-specific 2-thiouridylase MnmA 288 347 - -
Spst2g02358 489 Pfam tRNA methyl transferase HUP domain 75 278 - -
Spst2g02358 489 PANTHER - 61 478 - -
Spst2g02358 489 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 75 320 - -
Spst2g02358 489 Pfam tRNA methyl transferase PRC-barrel domain 283 345 IPR046884 -
Spst2g02358 489 Gene3D Translation factors 354 444 - -
Spst2g02358 489 CDD tRNA_Me_trans 75 435 IPR004506 GO:0008033|GO:0016740
Spst2g02358 489 Gene3D HUPs 59 287 IPR014729 -
Spst2g02358 489 Hamap tRNA-specific 2-thiouridylase MnmA [mnmA]. 74 436 IPR004506 GO:0008033|GO:0016740
Spst2g02358 489 Gene3D - 288 347 IPR023382 GO:0016783
Spst2g02358 489 Pfam Aminomethyltransferase beta-barrel domain 355 435 IPR046885 -
Spst2g02358 489 NCBIfam tRNA 2-thiouridine(34) synthase MnmA 75 435 IPR004506 GO:0008033|GO:0016740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02358 K21027 - gmx:100785275 945.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02358 2 23106104 23112094 Spst2g02358 2 23106104 23112094 ECH