Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02346 ATGGCGAATCGTGCCTTCTCGAAATGTTGTAAAATCCGTGATTTTGCTTCTTTATTATTGAGAGAGTTTCCCAGAACCAGCAAACCCATTAAATACACTTCAACTTCATTGCCCTTTGATGAATGTAATTCGTTCAAAACGGCGTCGTGTTTGAGGCAATACCATGACGGAAGGCCCAGAGGGCCCCTGTGGAGGGGAAAGAAGCTCATTGGCAAAGAGGCGCTCTTTGTGATATCGGGGTTAAAGAGGTTTAAGGATGACGAAGATAAGCTTCAGAGGTTCATCAAAACTCACGTTCTCAGACTCTTGAAGATGGACATGATCGCTGTTCTCACTGAACTTGAGCGCCAAGAACAAGTTTCTCTTGCTCTCATGATGTTTAAGGTGATGCAAAAGCAAGACTGGTACAAGCCTGATGCATTCCTCTATAAGGACTTGATAATTGCATTGGCAAGGTCTAAAAAAATGAATGAAGTATTGGAATTGTGGGAAAGCATGAGAAAGGAAAATCTGTTCCCTGATTCTCAGACTTATACTGAAGTCATAAGGGGCTTCTTGAACTACGGATCTCCCGCGGATGCGATGAACATATATGAGGACATGAAGAATTCTCCGGAACCACCAGACGAGTTGCCGTTCAGAATTTTGTTGAAAGGACTACTGCCGCATCCTCTTTTGAGAAACAAAGTGAAACAAGATTTTGAGGAGATTTTTCCTGATTCAAGTATCTATGATCCACCACAAGAGATATTTGGCGCACGCTGA 765 0.4275 MANRAFSKCCKIRDFASLLLREFPRTSKPIKYTSTSLPFDECNSFKTASCLRQYHDGRPRGPLWRGKKLIGKEALFVISGLKRFKDDEDKLQRFIKTHVLRLLKMDMIAVLTELERQEQVSLALMMFKVMQKQDWYKPDAFLYKDLIIALARSKKMNEVLELWESMRKENLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNSPEPPDELPFRILLKGLLPHPLLRNKVKQDFEEIFPDSSIYDPPQEIFGAR 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02346 254 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Spst2g02346 254 Pfam PPR repeat family 138 185 IPR002885 -
Spst2g02346 254 PANTHER PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC 42 253 IPR044795 -
Spst2g02346 254 Gene3D Tetratricopeptide repeat domain 68 254 IPR011990 GO:0005515
Spst2g02346 254 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
Spst2g02346 254 NCBIfam pentatricopeptide repeat 145 174 IPR002885 -
Spst2g02346 254 NCBIfam pentatricopeptide repeat 177 209 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02346 Spst-Chr2 22974644 22975803 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02346 14 220 Glycosyltransferase AT1G05670 23.214 1.28e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02346 - - gmx:100306428 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02346 2 22974644 22975803 Spst2g02346 2 22974644 22975803 ECH