Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02344 ATGCGGCAATGGAAACAGTTGGGAGAGGCGTTGGTGGCGGCTTCTATCACCAACACGCTATCCCACTCTCACGCTGCAACGCTCAATATCCCACGCTCCGTCGTTCTCGGACTCACCCAACCCCTTATTCTGAAAATCCTTTCAAACCCATCGCTTCACCCTTCGCAAAAGCTTCGTTTCTTCGAATGCTCCCGCGCCCACCACAACCCTTCCCCCGCCGCGTACTCCCTCGTCCTCCGCTCCCTCACCGGCGCAGGCTTCTTCTCCGACATCCCCTCCCTGCTCAATTCCATGACGCAAGACGGCGTCGTTCTCGACCCCCACTCCCTCAACCACCTCCTCCATTCCTTCATCCTGTCCTTGAACTTCAATTTAGTTTTTCAATTACTAGGTTACGTGCAGCACCTTCACCTCGACCCCACCCCAATCTGCAACTCCCTCATCGCTGCTCTACTCGCAAAAAACCAACTCTCTCTCGCGTTATCCATCTTCTTCAAGCTCCTCGACGCGTTGGATTCGAAATCCATCGCTTGCAACCAATTGTTGGTTTCTCTGAGAAAGGCAGATATGAGGGTGGAGTTTAAGCAAGTGTTTGCGAAATTGAGGGAGAAGAGAGGGTTTTCGTTTGATACACGGGGTTACAATGTGTGTATTCACGCGTTTGGTTGTTGGGGTGATTTGGCTACTTGCTTTGCGCTCTTCAAGGAGATGAAGGACAATAATAAGGGGTTGGTTGCCCCGGATTTGTGCACTTACAACAGTCTCATCACTGCGCTTTGCAGGCTTGGCAAGGTGGATGATGCGCTTGTTGTCTGGGAGGAGCTCAATGGCTCAGCTCACCAACCTGATCGCTTCACCTACACAAACCTTATTCATGCCTGTTGCAAAACATTCAGAATGGGTGATGCCACAAGGGTTTTTAACCACATGCAGAGCAATGGGTTCCGCCCGGATACGCTTGTTTATAATTCTCAGCTGGATGGACATTTTAAGGCCGCAAAGGTTGTTGAAGCCTGCCAGCTGTTTGAGAAAATGGTTCAACAAGGGGTGAGACCTTCTTGCTGGACTTATAATATTCTCATTCATGGGTTGCTTAGGAATGGCAGGGCGGAAGCTGCTTATACTATGTTTTGTGACCTCAAGAAGAAGGGCCAATTTGTGGATGGGATTACTTACAGCATTGTTGTGTTGCAGCTTTGTAAGGAGGGTCACCTAGAGGAGGCGCTGAAGTTGGTGGAAGAAATGGAAAGCAGAGGTTTTGTTGTTGACCTTGTCACCATTTCATCGCTGTTGATTAGCATTCATAGGCATGATCGCTGGGACTGGACGGACCGGCTTATGAAGCATATCAGGGAGGGTAATTTAGTACTTTCCGTCCTCAAATGGAAAGCTGGAATGGAAGCTTCTATGAAGAACCCTCCTGGCAAGAAAAAGGATTACTCACCCATGTTCCCTTCAAAAGGAGATTTTAGTGACATCATGAGCTTCATGAGCTGTGCCCGGGATACCACCAACATGAATGATGGGGAGGAAATTTCCTGCGATGAAATTGATGAGTGGTCATCATCGCCGCACATGGATAAGTTGGCCAATCAAGTGTGCTCCACTGGTTATTCTTCGCAGCTGTTTACTCCTTCTCGCGGTCAAAGAGTTCAAGAAAAAGGACCGGATTCTTTTGATGTTGATATGGTGAATACTTTCTTGTCTATATTTTTGGCCAAGGGAAAGTTGAGCTTGGCTTGCAAATTGTTTGAAATTTTTAGTGATGCAGGTGTGGATCCTGTGAGTTACACGTATAATTCTATCATGAGTTCTTTTGTCAAGAAGGGCTATTTCACTGAGACTTGGGCTGTTCTAACTGAAATGGGAGAAAAATTTTGTCCTGCTGATATAGCCTCGTACAATATGATAATTCAAGGTTTAGGAAAGATGGGAAGGGCTGATCTAGCCAATGCTGTTCTTGATAGGCTACTGAAGCAGGGTGGTTATCTTGACATAGTTATGTATAACACTCTCATCAATGCTCTGGGGAAGGCAGGCCGAATCGATGAGGTGAATAAGCTCTTTGAGCAAATGAGGAGCACTGGGATAAATCCTGATGTTGTCACGTATAATACATTGATTGAAGTTCACAGTAAGGCAGGGCGATTGAAGGATGCTTATAAGTTCTTAAAAATGATGCTGGATGCTGGATGCACCCCTAACCATGTTACAGACACTACTTTAGATTATCTAGGGAGGGAAATTGATAAATTGAGATTCCAAAGGGCATCAATTTTGAGTGAAAAAGATGATCCTTCTTGA 2304 0.464 MRQWKQLGEALVAASITNTLSHSHAATLNIPRSVVLGLTQPLILKILSNPSLHPSQKLRFFECSRAHHNPSPAAYSLVLRSLTGAGFFSDIPSLLNSMTQDGVVLDPHSLNHLLHSFILSLNFNLVFQLLGYVQHLHLDPTPICNSLIAALLAKNQLSLALSIFFKLLDALDSKSIACNQLLVSLRKADMRVEFKQVFAKLREKRGFSFDTRGYNVCIHAFGCWGDLATCFALFKEMKDNNKGLVAPDLCTYNSLITALCRLGKVDDALVVWEELNGSAHQPDRFTYTNLIHACCKTFRMGDATRVFNHMQSNGFRPDTLVYNSQLDGHFKAAKVVEACQLFEKMVQQGVRPSCWTYNILIHGLLRNGRAEAAYTMFCDLKKKGQFVDGITYSIVVLQLCKEGHLEEALKLVEEMESRGFVVDLVTISSLLISIHRHDRWDWTDRLMKHIREGNLVLSVLKWKAGMEASMKNPPGKKKDYSPMFPSKGDFSDIMSFMSCARDTTNMNDGEEISCDEIDEWSSSPHMDKLANQVCSTGYSSQLFTPSRGQRVQEKGPDSFDVDMVNTFLSIFLAKGKLSLACKLFEIFSDAGVDPVSYTYNSIMSSFVKKGYFTETWAVLTEMGEKFCPADIASYNMIIQGLGKMGRADLANAVLDRLLKQGGYLDIVMYNTLINALGKAGRIDEVNKLFEQMRSTGINPDVVTYNTLIEVHSKAGRLKDAYKFLKMMLDAGCTPNHVTDTTLDYLGREIDKLRFQRASILSEKDDPS 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02344 767 Gene3D Tetratricopeptide repeat domain 133 297 IPR011990 GO:0005515
Spst2g02344 767 Gene3D Tetratricopeptide repeat domain 694 747 IPR011990 GO:0005515
Spst2g02344 767 Gene3D Tetratricopeptide repeat domain 625 693 IPR011990 GO:0005515
Spst2g02344 767 Gene3D Tetratricopeptide repeat domain 520 624 IPR011990 GO:0005515
Spst2g02344 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 630 664 IPR002885 -
Spst2g02344 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Spst2g02344 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Spst2g02344 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
Spst2g02344 767 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 33 470 - -
Spst2g02344 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Spst2g02344 767 Gene3D Tetratricopeptide repeat domain 299 484 IPR011990 GO:0005515
Spst2g02344 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 595 629 IPR002885 -
Spst2g02344 767 Pfam PPR repeat 214 240 IPR002885 -
Spst2g02344 767 Pfam PPR repeat 667 697 IPR002885 -
Spst2g02344 767 Pfam PPR repeat family 247 296 IPR002885 -
Spst2g02344 767 Pfam PPR repeat family 317 365 IPR002885 -
Spst2g02344 767 Pfam PPR repeat family 699 742 IPR002885 -
Spst2g02344 767 Pfam PPR repeat family 596 642 IPR002885 -
Spst2g02344 767 NCBIfam pentatricopeptide repeat 667 701 IPR002885 -
Spst2g02344 767 NCBIfam pentatricopeptide repeat 633 665 IPR002885 -
Spst2g02344 767 NCBIfam pentatricopeptide repeat 702 735 IPR002885 -
Spst2g02344 767 NCBIfam pentatricopeptide repeat 321 354 IPR002885 -
Spst2g02344 767 NCBIfam pentatricopeptide repeat 214 240 IPR002885 -
Spst2g02344 767 NCBIfam pentatricopeptide repeat 250 275 IPR002885 -
Spst2g02344 767 NCBIfam pentatricopeptide repeat 597 630 IPR002885 -
Spst2g02344 767 NCBIfam pentatricopeptide repeat 356 384 IPR002885 -
Spst2g02344 767 NCBIfam pentatricopeptide repeat 390 423 IPR002885 -
Spst2g02344 767 NCBIfam pentatricopeptide repeat 285 319 IPR002885 -
Spst2g02344 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 700 734 IPR002885 -
Spst2g02344 767 Pfam PPR repeat 384 416 IPR002885 -
Spst2g02344 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 665 699 IPR002885 -
Spst2g02344 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02344 337 742 Glycosyltransferase AT1G05670 25.672 1.18e-29 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02344 - - gmx:100788992 1375.15