Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01486 ATGAAACCAAACCTTTCTGCATTCCTATTATTTCTTCTCTTTTTCGACCAATCCCTTTCCGCTAAGGCTGGTTTACTTCCTCCTAAGGGCATCCCCAACGGATTCAAGTGGCCCAAGGGAAATCCATTCAAGTCAAAATGGGTGGGTGACATCTTGGACGCTATTATCCAACAAAACCTTCCTGCGCAACCTCCTAACGCACCACCGGTGCAAATCAAAGGCTTGTCCCGAATCAAAGACTACTTTTCTAACTTCAGCTACCTCCAATCTGAACAAATAGACGATTATTTGGACCAGAAAACTGAATCAGCCATCAAAAGATACCAGCAATATTTCAATCTCCAAGTTAACGGCTACCTAACAAACGAGACATTGCAACTAATCTCGCGTCCACGATGTGCTGTCCCCGACATGAGTTTCGACTACGACTTCACTCAGAACGTGTCGTGGCCCAAAGCCGGTAACCGGTGGTTCCAAAAGAGAAACCTCACGTACGCTTTTCTTCTCGCAAGTCAAATCCCAGACAACACCACGAAAGTGTTCGGAGAGGCATTCACGCAGTGGGCGCATGCCACAGGGTTTTTGAACTTCACGAAGGCAACGACCTACGATGATGCGGACATTAAGATTGGATTCTACAATATCAGTGCCGTAGTTGACTATGACGCGTTTGGAGTCAGCTTTATAAGGGAGAAACCTCCTTCTAACGTGAAGACAGGGGAGATACATCTCGATGGGTCCATATACTGGGCTCTGCCCAGTGAAAACGACAGCTTGTCGTGGAAGGATGGAGTTTTGGACTTGGAGAGTGTGGCCATGCATCAGATAGGGCATTTACTGGGACTTGATCACTCTTCCATGAATGACTCTGTTATGTACCCTTATATATTGCCATCACAGCAACGAAAGGTAGACCTCTCTAATTCCGACAAGAACAACATTATGAATCAGAATGCTAACGTCAATTCTGGCGATGGTGGGTGTTTGGGAGTGCTTTTAATGACCATTATATCTCTCGGATTTACTTATGTGCTTCTTGGGTATTATGTTTCCTCGTACGTCTCGCACTTGCACGTTTGTTTGTGTCGTGGATTTGTAAGTTGGGTGTAG 1110 0.4559 MKPNLSAFLLFLLFFDQSLSAKAGLLPPKGIPNGFKWPKGNPFKSKWVGDILDAIIQQNLPAQPPNAPPVQIKGLSRIKDYFSNFSYLQSEQIDDYLDQKTESAIKRYQQYFNLQVNGYLTNETLQLISRPRCAVPDMSFDYDFTQNVSWPKAGNRWFQKRNLTYAFLLASQIPDNTTKVFGEAFTQWAHATGFLNFTKATTYDDADIKIGFYNISAVVDYDAFGVSFIREKPPSNVKTGEIHLDGSIYWALPSENDSLSWKDGVLDLESVAMHQIGHLLGLDHSSMNDSVMYPYILPSQQRKVDLSNSDKNNIMNQNANVNSGDGGCLGVLLMTIISLGFTYVLLGYYVSSYVSHLHVCLCRGFVSWV 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01486 369 Gene3D Collagenase (Catalytic Domain) 69 317 IPR024079 GO:0008237
Spst2g01486 369 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 103 325 - -
Spst2g01486 369 SMART col_5 153 323 IPR006026 GO:0006508|GO:0008237|GO:0008270
Spst2g01486 369 FunFam Metalloendoproteinase 5-MMP 67 322 - -
Spst2g01486 369 Pfam Putative peptidoglycan binding domain 76 127 IPR002477 -
Spst2g01486 369 PRINTS Matrixin signature 128 141 IPR021190 GO:0004222|GO:0006508|GO:0008270
Spst2g01486 369 PRINTS Matrixin signature 271 296 IPR021190 GO:0004222|GO:0006508|GO:0008270
Spst2g01486 369 PANTHER MATRIX METALLOPROTEINASE 61 315 - -
Spst2g01486 369 Pfam Matrixin 156 315 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01486 Spst-Chr2 13624042 13625151 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01486 - - vra:106780599 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01486 2 13624042 13625151 Spst2g01486 2 13624042 13625151 ECH