Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01484 ATGGGATTTCTTCAACATCCCTTGTGTTGCCATTCACAAAACCAACAACAACAACAATCCTATGATCACTTCAATTCAGAATCATCAACCTCTTATTCTCTCCATTCGCAACCAAGTCTTCCTTCAGTCCCTTCACTAAGTTCCCTCACCCCACAACAACCCCACCACCTTCGACAACAACCTCAAACCACCATCAAAATCCACTCATCCCCAATCTCCTCCCTCGCCCTCCAAGGCAAACTCCTCTACAGCGCCGCATCCAGTGGCGAGGTCAAAACATGCAGCAGAGACCCTTTTACCCTCCAAACCACCACCACCAAGACCAACGTTGTTATCGTCGCAACCACCAACGCGCCTATCAAGTCCCTCATCGTATCTCAGGACACGCTCTTCACGGCACACCAAGACCACAAAATCCGTGTCTGGAAAACCGACCAACCCACCAAGTGCATCGCCACGCTTCCCACCCTCCACGACCGTTTCTCCAAGCTATTCTCCTCCAAGAACTACGTCGAGGTGCGCCGCCACAAGAAGCGCACGTGGGTGCATCACGTGGACGCCGTGTCCACCCTCGCGCTCTCCCACGACAGCTCCCTCCTCTACTCCGCTTCCTGGGACAGGACGTTCAAGGTCTGGCGAACCTCGGACTTCAAATGTTTAGAGTCCGTACAAAACGCTCACGAGGACGCCATTAACTCCTTGGTTTTGTCGAATGACGGCGCTGTCTACACGGGCTCCGCCGACACAAAGATAAAGATGTGGAAGAAGCGCGATGGTGAGAAAAAGCATTCTCTGGTGGGAACGTTGGAGAAGCATAAATCTGCAGTTAACGCTCTCGCGCTTAGCGCTGATGGGTCGGTGCTGTACTCTGGCGCATGTGATAGGTCAATTTTAGTGTGGGAAAGTGATGAGAATGATGATAATAGCATGGTGGTGGTGGGGGCTTTGAGGGGGCACACAAAGGCTATACTGTGTTTGGTGGTGATGGCGGATTTGGTGTGTAGTGGATCTGCTGATAACAGTGTTAGGGTATGGAGGAAAGAGATTGAGAAGGGTTATTCGTGTTTGGCGGTTTTGGAAGGTCATCGACGACCCGTAAAGTGTTTGGCTATGGCTGTTGACTCCAACAGTGGTGGTCCTGATGAGGATGATAGGTCTTATCTGATTTACAGTGCCGGTTTGGATTGTGACATTCAAGTGTGGCAAATACGCGTTCCTTTGTTGTCATAG 1230 0.5106 MGFLQHPLCCHSQNQQQQQSYDHFNSESSTSYSLHSQPSLPSVPSLSSLTPQQPHHLRQQPQTTIKIHSSPISSLALQGKLLYSAASSGEVKTCSRDPFTLQTTTTKTNVVIVATTNAPIKSLIVSQDTLFTAHQDHKIRVWKTDQPTKCIATLPTLHDRFSKLFSSKNYVEVRRHKKRTWVHHVDAVSTLALSHDSSLLYSASWDRTFKVWRTSDFKCLESVQNAHEDAINSLVLSNDGAVYTGSADTKIKMWKKRDGEKKHSLVGTLEKHKSAVNALALSADGSVLYSGACDRSILVWESDENDDNSMVVVGALRGHTKAILCLVVMADLVCSGSADNSVRVWRKEIEKGYSCLAVLEGHRRPVKCLAMAVDSNSGGPDEDDRSYLIYSAGLDCDIQVWQIRVPLLS 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01484 409 SUPERFAMILY WD40 repeat-like 57 403 IPR036322 GO:0005515
Spst2g01484 409 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 301 - -
Spst2g01484 409 SMART WD40_4 352 402 IPR001680 GO:0005515
Spst2g01484 409 SMART WD40_4 174 213 IPR001680 GO:0005515
Spst2g01484 409 SMART WD40_4 216 255 IPR001680 GO:0005515
Spst2g01484 409 SMART WD40_4 58 95 IPR001680 GO:0005515
Spst2g01484 409 SMART WD40_4 309 346 IPR001680 GO:0005515
Spst2g01484 409 SMART WD40_4 262 301 IPR001680 GO:0005515
Spst2g01484 409 SMART WD40_4 106 143 IPR001680 GO:0005515
Spst2g01484 409 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 212 - -
Spst2g01484 409 Pfam WD domain, G-beta repeat 314 345 IPR001680 GO:0005515
Spst2g01484 409 Pfam WD domain, G-beta repeat 265 300 IPR001680 GO:0005515
Spst2g01484 409 Pfam WD domain, G-beta repeat 354 401 IPR001680 GO:0005515
Spst2g01484 409 Pfam WD domain, G-beta repeat 179 212 IPR001680 GO:0005515
Spst2g01484 409 Pfam WD domain, G-beta repeat 219 255 IPR001680 GO:0005515
Spst2g01484 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 224 264 IPR001680 GO:0005515
Spst2g01484 409 Gene3D - 162 406 IPR015943 GO:0005515
Spst2g01484 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 310 IPR001680 GO:0005515
Spst2g01484 409 Pfam Nucleoporin Nup120/160 102 162 - -
Spst2g01484 409 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 345 - -
Spst2g01484 409 CDD WD40 64 402 - -
Spst2g01484 409 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 20 404 IPR045182 -
Spst2g01484 409 Gene3D - 12 161 IPR015943 GO:0005515
Spst2g01484 409 FunFam BnaA09g28200D protein 171 259 - -
Spst2g01484 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 345 IPR001680 GO:0005515
Spst2g01484 409 MobiDBLite consensus disorder prediction 19 64 - -
Spst2g01484 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 222 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01484 Spst-Chr2 13560371 13561600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01484 226 403 Miscellaneous Gene Families AT5G08390 25.543 2.20e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01484 - - vun:114174011 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01484 2 13560371 13561600 Spst2g01484 2 13560371 13561600 ECH