Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01436 ATGCTATACTCTCTAATCCGCTTCCGCCGTTACGCTTCTCCGCACTCTCCCCTTCTTCGTCTTTCTGTCAACAGTTTCTCCTCAGCCGTAGCTGCCATGGTTGCTCACGCGAAGGACGACGCCTACCTTCAGGCGGCGATTCCGAAGCGCATCCATCTGTTCGAGACTATCCAGGCGGAGCAGCGTACGCAGCGCCTCTCGCTGTCGCCGGATCCTATCAAGGTCACTCTCCCCGACGGTGGCGTGAGGGAGGCGAAGAAGTGGCTCACGACTCCGCTCGACGTGGCGCGTGAAATCTCGAAGAATTTGGCTAACAACGCGCTCATCGCCAAGGTCAATGGCGTGCTCTGGGACATGACGCGCCCGTTTGAGGATGATTGCCAGCTCCAGATCTTCAAGTTCGACGATGACGAAGGACGCGACACGTTTTGGCACTCAAGCGCGCACATTCTCGGCCAGTCTCTTGAGACGGAGTATGGATGCAAGCTCTGCATTGGGCCTTGCACTACAAGAGGAGAGGGATTCTATTATGATGCGTTTTACGGTGACTTGGGTCTCAATGACGATCACTTCAAGCAAATTGAAGCTGGCGCATTGAAGGCTGTTGCGATTGAGATCATCAATGATTTGCCTGCCGACAAAACTATCACGGTGTACAGATGTGGTCCCCTGGTTGATTTGTGTCGCGGACCTCATATACCTAATACATCCTTTGTCAAAGCAATTGCATGTTTAAAGGCTTCGTCAGCATATTGGAGGGGGGACAAAGATCGTGAAAGTTTACAGAGAGTTTATGGCATATCTTATCCTGATCAGAAGAGTTTAAAGGAATACTTACATCGGCTGGAGGAGGCTAAAAAGTATGATCACAGGATTTTGGGTGTGAAACAGGAGCTTATTCTTCATCATGAATGGAGCCCAGGAAGCTGGTTTTTTCTTCCACATGGCACTCGGATCTACAACAAACTCATGGACTTCATTCGAAATCAGTACAGAGACAGGGGTTATCAAGAGGTCATATCTCCAAATGTATTTAACATGGATCTGTGGGTGCAATCCGGTCATGCTGCAAATTATAGAGAGGATATGTTTATCTTAGAGATTGACAAACAAGAGTTTGGGTTGAAACCAATGAATTGCCCCGGGCACTGCCTGATGTTTAAACACAGGGTTCGATCATATCGAGAACTTCCTCTCCGTTTTGCTGATTTTGGGGTTTTGCATCGGAATGAGGCTAGTGGTGCCCTAAGTGGATTAACACGCGTTAGGAGATTTCAGCAGGATGATGCACATATTTTCTGCAGGGAGTCCCAGATAAAGGATGAAGTGAGGAACGCCTTGAATTTCATCAATTATGTCTATAACATATTTGGTTTCACATATGAGCTGAAGCTTTCAACGAGACCAGAGAAATACCTAGGAGATATTGCAACTTGGGATAAGGCTGAAAGTGCTCTTAAAGAAGCTTTACATGATTTTGGCAAGCCATGGCAGTTGAATGAAGGGGATGGGGCATTTTACGGACCAAAGATAGACATCAGTGTGTCTGATGCATTATGTAGGAAATTCCAGTGCGCAACATTGCAGCTTGACTTTCAGCTTCCAGATCGTTTTAAGTTGGAATTCTCAGCTGAGGATGAAGCCAAAATTGAGAGACCTGTAATGATACATAGAGCAATTCTAGGATCAGTTGAGCGCATGTTTGCCATACTTTTAGAGCACTACAAGGGTAAATGGCCCTTCTGGCTCAGTCCTCGTCAAGCAATTGTATGCCCTGTGTCTGAAAAATCACAATCCTATGCACTGCAGGTGCGAGATCAGATCCACCAAGCAGGGTATCACGTTGATGCTGATACGACTGACAGGAAGATTCAAAAGAAGGTGCGAGAAGCACAATTAGCACAATATAACTACATATTGGTTGTCGGAGAGGAGGAAGCTAACACTGGACAGGTGAGTGTACGAGTTAGAGACAAGGCAGATCATAACGTTATGAGTATTGAGAACCTACTCAAACATTTCAGAGACGAAGCTGCAGCTTTCCATTGA 2049 0.4661 MLYSLIRFRRYASPHSPLLRLSVNSFSSAVAAMVAHAKDDAYLQAAIPKRIHLFETIQAEQRTQRLSLSPDPIKVTLPDGGVREAKKWLTTPLDVAREISKNLANNALIAKVNGVLWDMTRPFEDDCQLQIFKFDDDEGRDTFWHSSAHILGQSLETEYGCKLCIGPCTTRGEGFYYDAFYGDLGLNDDHFKQIEAGALKAVAIEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKAIACLKASSAYWRGDKDRESLQRVYGISYPDQKSLKEYLHRLEEAKKYDHRILGVKQELILHHEWSPGSWFFLPHGTRIYNKLMDFIRNQYRDRGYQEVISPNVFNMDLWVQSGHAANYREDMFILEIDKQEFGLKPMNCPGHCLMFKHRVRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQIKDEVRNALNFINYVYNIFGFTYELKLSTRPEKYLGDIATWDKAESALKEALHDFGKPWQLNEGDGAFYGPKIDISVSDALCRKFQCATLQLDFQLPDRFKLEFSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQSYALQVRDQIHQAGYHVDADTTDRKIQKKVREAQLAQYNYILVVGEEEANTGQVSVRVRDKADHNVMSIENLLKHFRDEAAAFH 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01436 682 ProSiteProfiles TGS domain profile. 71 133 IPR004095 -
Spst2g01436 682 PRINTS Threonyl-tRNA synthetase signature 375 403 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Spst2g01436 682 PRINTS Threonyl-tRNA synthetase signature 580 592 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Spst2g01436 682 PRINTS Threonyl-tRNA synthetase signature 509 537 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Spst2g01436 682 PRINTS Threonyl-tRNA synthetase signature 408 431 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Spst2g01436 682 PRINTS Threonyl-tRNA synthetase signature 553 566 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Spst2g01436 682 CDD TGS_ThrRS 73 138 - -
Spst2g01436 682 Hamap Threonine--tRNA ligase [thrS]. 138 680 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Spst2g01436 682 FunFam Probable threonine--tRNA ligase, cytoplasmic 403 578 - -
Spst2g01436 682 Gene3D - 137 270 - -
Spst2g01436 682 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 314 580 IPR006195 -
Spst2g01436 682 SMART tRNA_SAD_4 216 265 IPR012947 GO:0004812|GO:0005524|GO:0043039
Spst2g01436 682 FunFam Threonine--tRNA ligase, cytoplasmic 71 132 - -
Spst2g01436 682 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 369 575 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Spst2g01436 682 Gene3D Bira Bifunctional Protein; Domain 2 271 578 IPR045864 -
Spst2g01436 682 FunFam Threonine--tRNA ligase mitochondrial 1 579 682 - -
Spst2g01436 682 CDD ThrRS_anticodon 585 675 IPR047246 -
Spst2g01436 682 SUPERFAMILY ThrRS/AlaRS common domain 135 287 IPR018163 GO:0000166
Spst2g01436 682 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 216 265 IPR012947 GO:0004812|GO:0005524|GO:0043039
Spst2g01436 682 SUPERFAMILY Class II aaRS ABD-related 573 677 - -
Spst2g01436 682 SUPERFAMILY TGS-like 73 133 IPR012676 -
Spst2g01436 682 PANTHER THREONINE-TRNA LIGASE 203 681 - -
Spst2g01436 682 FunFam Threonine--tRNA ligase mitochondrial 1 269 397 - -
Spst2g01436 682 Pfam Anticodon binding domain 587 676 IPR004154 -
Spst2g01436 682 CDD ThrRS_core 289 585 IPR033728 -
Spst2g01436 682 Gene3D - 71 132 IPR012675 -
Spst2g01436 682 SUPERFAMILY Class II aaRS and biotin synthetases 289 572 IPR045864 -
Spst2g01436 682 Gene3D - 202 229 - -
Spst2g01436 682 Gene3D - 579 681 IPR036621 -
Spst2g01436 682 Pfam TGS domain 73 133 IPR004095 -
Spst2g01436 682 NCBIfam threonine--tRNA ligase 201 677 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01436 Spst-Chr2 13098660 13118124 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01436 K01868 - gmx:100812652 1293.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01436 2 13098660 13118124 Spst2g01436 2 13098660 13118124 ECH