Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01426 ATGGCGGATTCTGCCTCTTCCCCCGCAACCCTACCCCCCAATCCCCAACCCTCCGAATCCGCACCTCCCAACCCACCCGATCCACTCCCCCAATCCTCAACACCACCTTCATCCACGCCCCTCGCCGCAAACCCTAATCCCAATCCAACGCTGCTCCCTCCGCCGCCCGCGTTACTCTTTCCTGCCGGCACTCCGCCGCAGGTCCCCGGCGTTCTCCCTCCGTCATTCCGCCCGCTCGCTCCTCAGGTACCACAATTCTCCCCCGTCCCCGCGCCCCACCCGGTCTACCAAAACCCTACCGTTCCGCCGCCCGGCGTTGCCAGCGCCCCGGCGCCGCCGCAGATGCAGCCGATGATGTCGTACCAGGTTCAACCCGGTAATCCGGTCATGCGACCCTTCGCTCCGATCCCTAACGGTTACGCTCCAGCTCCGACCGCAAATCCCGCGGGAATTCCTCGTTACCCCCCTCCTTATGGAACTATGGTTCGTCCTGTATTTCCTCCACGACCTCCTGGAGCAGTTAACTTACCTCCAATATCACGCCCACCTGTTGCAGGGATCCCTACTGTTCGCCCAATTATTCCTCCTGTTGTCAGACCTTTGGTAGCCCCTAGTGTTACTCCAGCTGAGAAGCCTCAAAACACCGTTTATATTGGCAAGATTGCATCAACTGTGGAAAATGAGTTCATGCTCTCTCTCCTTCAATTATGCGGAACTATCAAGACCTGGAAACGTCCTCAGGATTTATCAACTGGAACTCCTACCAGTTTTGGGTTTTACGAGTTTGAGTCTGCAGAAGGGGTTCTCCGTGCCTTGCGTCTCCTTACTAAATTGAATATTGATGGGCAAGAACTAAAGGTAAACGTGAATCAAGCTATGAAAGAACATCTGGAGCGGTATGTTCAGAAAAAAACTGAGAACTTGAACAAAGAAACTCAGGCAGGAGTAGTTGAAAAAGATGAAGGTGAACAACCTTCTAATGCAAATGAGGATACAAAGGCTGTGAAAGAACCCTCAAATAAAGCGGATAGTGAATCAGTGAATAAGGAATCCCCTGATGCAACAAACTTTGGGATTGTCACTGATGAAGATAGAGAAGTGGACCGTGAGGCTTTAGAAAAGATTACAAAGATGATAGAGGAAAGGCTGAAAACAAGACCTTTGCCTCCACCACCTGCACAGCCAAGTGCTGACGGTTCTGTGAATTTAACTTCAGAACAATCTGTTAAAACAAGAGATGGAGACTCTGTTGTTGATACAGAGAAGAATGAATCTGCTGAAAATAAAAATGAGAAAGAGACAAGCAATGAGAGACCAAGCAGCGAACATGATAGGCCTGAAAGCCCTGACAGAAGGCATGATAGAAAAAACAGAGAGAGAGACCGAGATAGGGAACTAAAACGAGAAAAGGAAAGAGAACTTGAAAGATATGAGAGAGAAGCAGAACGGGAACGAGTTCGGAAAGAGAGGGAACAAAGACGAAGAATTGAGGAGGCTGAACGTCAGTATGAAGCATATCTGAAGGAATGGGAGTACAGAGAGCGAGAGAAAGAAAAAGAGCGGCAGTATGAAAAAGAGAAGGAGAAGGAAAGGGAAAGAAAACGGAGAAAGGAGATACTTTATGATGAAGAGGATGAGGATGAAGATTCTAGGAAAAGGTGGCGTAGAAGTGCGATAGAGGAGAAGAGAAAGAAGAGGTTGCGTGAGAAGGAAGATGACCTGATTGACAAACAAAAGGAAGAGGAAGAAATCGCCGAGGCTAAGAAAAAGGCCGAGGAGGAACAGAAGCGGCAAAGAGATGCTTTAAAACTATTATCTGAGCATGTGGCAAATGGTGGTAATGAAAATATGATTACTGAAGAGGTTACTAATGAAGTCAAAAGCAATGTTACTGAACCAGATACTGTAGCTGATTATAGTGGTGAAGATCATACTGGTGATGGGAATGCACTAAATGTCACCAATGATGAATTAACCATAGTTGCTCCAAATGATACACAAGGGAATGCTCCTACAAAAAAATTGGGTTTTGGCCTTGTTGGTTCAGGGAAAAGAACAACTGTTCCTTCTGTTTTCCATGAAGAGGAGGATGATGATGCACACAAGGACAAAAAACTGAGGCCATTGGTTCCAATTGATTACTCAACTGAAGAATTGCAGGCTGTTCAACCTACAGTTCCTGGAGCAACCCCACCAAATTTGGCTGCTGCTGCAGAATTTGCAAAGCGAATATCTAGTACAAATTTCAAGGAAGATAAGCTAGATGGAGAACGTGATAGAAGTAGGCGATCAAACGATAAATCTAACCACCGGGACAGGGACAGAAATGATGAAGATGGTATTCACAACAGAGATGAAAACAAGGAGAGAATGTCTGATCGTGACAGGGATCGAGATCATGGATCGGAGAAAGTTAAGACTTCTGATAACAAGAGGCTTTTGGATGCTAAACAATTGATTGATATGATACCAAAGACGAAGGAGGAGTTGTTCTCATATGAGATAGACTGGGCAGTGTATGATAAGCATCAATTACATGAAAGAATGAGACCGTGGATTTCAAAGAAAATCAAAGAGTTTTTGGGAGAAGAAGAGACTACATTGATAGATTATATTGTTTCCAGTACACTAGAACATGTGAAAGCTTCCCAAATGCTTGAGCGTCTTCAGATTATTTTGGATGAAGAGGCTGAAATGTTCGTTCTAAAGATGTGGAGGATGCTTATCTTTGAAATAAAGAAGGTAGAGACAGGTTTAGCTTTGAGGTCAAAATCTTGA 2778 0.455 MADSASSPATLPPNPQPSESAPPNPPDPLPQSSTPPSSTPLAANPNPNPTLLPPPPALLFPAGTPPQVPGVLPPSFRPLAPQVPQFSPVPAPHPVYQNPTVPPPGVASAPAPPQMQPMMSYQVQPGNPVMRPFAPIPNGYAPAPTANPAGIPRYPPPYGTMVRPVFPPRPPGAVNLPPISRPPVAGIPTVRPIIPPVVRPLVAPSVTPAEKPQNTVYIGKIASTVENEFMLSLLQLCGTIKTWKRPQDLSTGTPTSFGFYEFESAEGVLRALRLLTKLNIDGQELKVNVNQAMKEHLERYVQKKTENLNKETQAGVVEKDEGEQPSNANEDTKAVKEPSNKADSESVNKESPDATNFGIVTDEDREVDREALEKITKMIEERLKTRPLPPPPAQPSADGSVNLTSEQSVKTRDGDSVVDTEKNESAENKNEKETSNERPSSEHDRPESPDRRHDRKNRERDRDRELKREKERELERYEREAERERVRKEREQRRRIEEAERQYEAYLKEWEYREREKEKERQYEKEKEKERERKRRKEILYDEEDEDEDSRKRWRRSAIEEKRKKRLREKEDDLIDKQKEEEEIAEAKKKAEEEQKRQRDALKLLSEHVANGGNENMITEEVTNEVKSNVTEPDTVADYSGEDHTGDGNALNVTNDELTIVAPNDTQGNAPTKKLGFGLVGSGKRTTVPSVFHEEEDDDAHKDKKLRPLVPIDYSTEELQAVQPTVPGATPPNLAAAAEFAKRISSTNFKEDKLDGERDRSRRSNDKSNHRDRDRNDEDGIHNRDENKERMSDRDRDRDHGSEKVKTSDNKRLLDAKQLIDMIPKTKEELFSYEIDWAVYDKHQLHERMRPWISKKIKEFLGEEETTLIDYIVSSTLEHVKASQMLERLQIILDEEAEMFVLKMWRMLIFEIKKVETGLALRSKS 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01426 925 Coils Coil 512 540 - -
Spst2g01426 925 SMART pwi_2 841 914 IPR002483 GO:0006397
Spst2g01426 925 SMART rrm1_1 215 288 IPR000504 GO:0003723
Spst2g01426 925 MobiDBLite consensus disorder prediction 412 498 - -
Spst2g01426 925 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 925 - -
Spst2g01426 925 MobiDBLite consensus disorder prediction 10 76 - -
Spst2g01426 925 MobiDBLite consensus disorder prediction 96 111 - -
Spst2g01426 925 Coils Coil 564 608 - -
Spst2g01426 925 MobiDBLite consensus disorder prediction 612 629 - -
Spst2g01426 925 ProSiteProfiles PWI domain profile. 828 925 IPR002483 GO:0006397
Spst2g01426 925 MobiDBLite consensus disorder prediction 514 629 - -
Spst2g01426 925 MobiDBLite consensus disorder prediction 313 327 - -
Spst2g01426 925 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 292 IPR000504 GO:0003723
Spst2g01426 925 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 286 IPR000504 GO:0003723
Spst2g01426 925 MobiDBLite consensus disorder prediction 514 604 - -
Spst2g01426 925 Gene3D - 206 323 IPR012677 -
Spst2g01426 925 MobiDBLite consensus disorder prediction 334 348 - -
Spst2g01426 925 CDD RRM_RBM25 214 297 IPR034268 -
Spst2g01426 925 MobiDBLite consensus disorder prediction 662 711 - -
Spst2g01426 925 MobiDBLite consensus disorder prediction 96 115 - -
Spst2g01426 925 MobiDBLite consensus disorder prediction 380 498 - -
Spst2g01426 925 Coils Coil 453 509 - -
Spst2g01426 925 MobiDBLite consensus disorder prediction 304 365 - -
Spst2g01426 925 Pfam PWI domain 848 911 IPR002483 GO:0006397
Spst2g01426 925 Gene3D PWI domain 804 920 - -
Spst2g01426 925 MobiDBLite consensus disorder prediction 748 810 - -
Spst2g01426 925 MobiDBLite consensus disorder prediction 1 76 - -
Spst2g01426 925 MobiDBLite consensus disorder prediction 397 411 - -
Spst2g01426 925 SUPERFAMILY RNA-binding domain, RBD 160 288 IPR035979 GO:0003676
Spst2g01426 925 MobiDBLite consensus disorder prediction 689 711 - -
Spst2g01426 925 FunFam RNA Binding Motif protein homolog 804 920 - -
Spst2g01426 925 SUPERFAMILY PWI domain 846 913 IPR036483 GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01426 Spst-Chr2 12979804 12985530 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01426 K12822 - gmx:100809428 1217.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01426 2 12979804 12985530 Spst2g01426 2 12979804 12985530 ECH