Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01385 ATGAAGAGGAACAGAAGTTTTTCCTCGCTCTTTTTCCTGTCCTTGTTGGTGATTGTCTTTGTCACCCTCTCTACAGTTTCTGTGGAAGCAAGGAAGACCAACACCAGCAGAAAATTTCACAAACGTCACAATCATAAAGATAGTAGCAATGGCAACGGTCGAGGGTCACATTCTCCATATCCAGCACCAACCCCTCCCCATTATTATGGTCCTCAAGGGAGCCTGTTTGACGTTTTGTCTTTTGGTGCCAAGGGTAATGGAGTTTCTGATGATTCAGAGGCACTTGTAGCTGCATGGAAAGGTGCATGTAAAGTTGCTGGTGCTACAGTTAAAATTCCAGCACAACTCAAGTTCCTCATCAAACCTCTTACTTTACTAGGCCCTTGTATGCCTGACCTTAGTCTTCAGATAGATGGAACTCTATTGGCACCTCCTGAAGCATCTTCCTGGCCAACATCCAGTTTGTTTCAGTGGATAAATTTCAAGTGGGTGCAGAACTTCACCATCAAAGGTTCTGGCACTGTTGATGGCCAAGGCTACAACTGGTGGAGCTCCTCAGAATTTTATGACATACAGAAGAAGAGCTACCCCAAAACAATTCCAAGCATGAAACCAACAGCTATAAGATTTTACTCCAGCAATATTGTCACAGTTCGTGATATCAGAATCATAAACAGTCCTCTGTGCCATCTAAAATTTGACAACTCAAAGGGGATTGAAATTGACAACATTACAATATCCTCCCCAGAGAATAGCCCAAACACTGATGGCATTCACTTACAAAACACACAGGACGTGGAAATTCAACGTTCTATCATTGCAACAGGAGATGACTGTGTATCCATCCAAACCGGTTGCTCTAATATTCATGTCCACCACATTAATTGTGGCCCTGGACATGGTATAAGTTTGGGAGGATTAGGGAAAGACAAAAGTGCAGCATGTGTGTCTGACATCATTGTTGAGGATATCTCTATGAAAAACACCCTATATGGAGCAAGGATCAAAACATGGCAGGGGGGCATTGGTATGGTTAAAAATGTGTCATTTTCCAGAATTCAAGTCTACGATGTCATGTTTCCAATAATGATAGACCAATACTATTGTGACAAGCAAATATGCAATAACCACACAAGCAGTGTGGTGATTTCTGGGGTCAAGTTTGATCAAATAAGTGGAACTTTTGGGATGCAGCCTGTCCATCTAGCTTGTAGCAATTTCATACCATGCACAGATGTTGATTTAACTGACATTCAACTGAGTCCCTCCCCTAAATATAAAGGTTTGCAACAAGCTGTATGCTGGAACTCTTATGGAAAGTCACAAGGCCCCTTGCTACCTTCAAGCATTGATGATTGCTTGAGAAGTGGTGGTGGACTAATCAAGAGGATAGCAAGGTCACATGATAGAGTGTGTTACTAA 1422 0.4219 MKRNRSFSSLFFLSLLVIVFVTLSTVSVEARKTNTSRKFHKRHNHKDSSNGNGRGSHSPYPAPTPPHYYGPQGSLFDVLSFGAKGNGVSDDSEALVAAWKGACKVAGATVKIPAQLKFLIKPLTLLGPCMPDLSLQIDGTLLAPPEASSWPTSSLFQWINFKWVQNFTIKGSGTVDGQGYNWWSSSEFYDIQKKSYPKTIPSMKPTAIRFYSSNIVTVRDIRIINSPLCHLKFDNSKGIEIDNITISSPENSPNTDGIHLQNTQDVEIQRSIIATGDDCVSIQTGCSNIHVHHINCGPGHGISLGGLGKDKSAACVSDIIVEDISMKNTLYGARIKTWQGGIGMVKNVSFSRIQVYDVMFPIMIDQYYCDKQICNNHTSSVVISGVKFDQISGTFGMQPVHLACSNFIPCTDVDLTDIQLSPSPKYKGLQQAVCWNSYGKSQGPLLPSSIDDCLRSGGGLIKRIARSHDRVCY 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01385 473 SUPERFAMILY Pectin lyase-like 63 449 IPR011050 -
Spst2g01385 473 Gene3D - 63 451 IPR012334 -
Spst2g01385 473 PANTHER - 75 440 - -
Spst2g01385 473 SMART pbh1 316 337 IPR006626 -
Spst2g01385 473 SMART pbh1 286 306 IPR006626 -
Spst2g01385 473 SMART pbh1 236 262 IPR006626 -
Spst2g01385 473 SMART pbh1 345 366 IPR006626 -
Spst2g01385 473 SMART pbh1 263 284 IPR006626 -
Spst2g01385 473 Pfam Glycosyl hydrolases family 28 108 428 IPR000743 GO:0004650|GO:0005975
Spst2g01385 473 MobiDBLite consensus disorder prediction 34 64 - -
Spst2g01385 473 FunFam polygalacturonase At1g48100 64 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01385 Spst-Chr2 12543323 12545964 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01385 1 472 Glycoside Hydrolase AT3G26610 60.788 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01385 K01213 - gmx:100803027 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01385 2 12543323 12545964 Spst2g01385 2 12543323 12545964 ECH