Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01226 ATGTCGTTAATATGCGTTTTAGGGTGTGTTTTGCTCCGCCGCAAAGTGCTCACCCATCGCCCATGCTTGTTCGGGTTGTTTTTCTCCTCTGCTTCTTCTGCATTAATCTCCGAAGACCACGTGTTCGATGAAAGTCCAAAATCTTTTGCTAGTTTTGTGATTAATAGGCATACGCCCCATGTTGCCGCAAAAAGTAGGGTGTATTTTCCTTTAGTGTCTAGGGTGTTCAAATCACTGAGTTGGAGTGTGGCAAGAGAAGTAAGGTTTGGGCGTTGGGTTGAGAGTCATGGGTTTTCTCACTCAATCAATTGCTTTAGGATTATCGTTCATACGTTTGCTTTGGCGGGGATGCATTTGGAAGTGTTTGATTTGCTTAGTGATATAGTTGGGTTCTGTAATGAGACCAATTATGATATCTTTAAGTTGTTTTCAGCTTTGGTGGATTCACCCCACCATTTGGAAAGATCAGGCATTGTGTTCGATGTGCTCATAAAAGTGTTTGCATCCAACTCTATGCTGGAAAATGCTATTGATGTGTTTGTGAATGCTAAGCATGTTGGGCTTGAGCCTGGTATAAGGACTTGCAATTTCTTGTTCAAATGTTTGGTTGAAGCGAATAGAGTGGAGTCTGTCAGATGGTTTTTTAAGGAATTAAAGGACAGTGGTCCATCGCCAAATATCTACACCTATACAATCATGATGAACTTTTATTGCAGTGATGCAGATATGAGACGGGCTGCTGTGGTTCTAGGAAAAATATACCAGATCGGAGAGAAGCCCACTGTTGTCACTTATGGTACTTATATTCGTGGACTTTGTAAAGTTGGTGATGTTGAGGCAGCGCTGATGTTAATTCACAACTTGCACAAAGAAAAACAGCTTCTCAATAGTCATTCTTTTAATGCTGTAATTTATGGGTTTTGTAAAAGAGGTGAAGTGTGTAAGGCTTTGCAAGTTTTGGTAGAAATGAAGAAGTCTGGGATATTACCAGATGTTTATAGCTACAGCATATTAATTGATGCATTCTGCAAGAAAGGGGATGTAATGAGCAGTCTTAGCTTGATGGAGGAAATGAAACGCTCCCAGGTACAACCATCCATTGTTAGCTACACCTCCCTCATCCATGTCCTTTGCAAGAAGAATCTGATACAAAATGCTGTGGAAATATTCCGTAGTATTGGTGCTTCTACTATGAAATATGATCAGATTATTTATGAAACTTTAATTGATGGATTTTGCATGCAAGGTGATGTGGATTCAGCCAAAAAGCTTTTGAAGGAGATGACCAGCTATGGATTGGTTCCAACTGCTTTTAGTTACAGTAGTCTAATTAAGCTGTACTACAAACTAGGACTATACGATCAGGCATTGGGTGTTTTTGAAACCATGCAAAGTTATGGTATTTGGCCAAATATTATTGCCTGCAATTATATTATTGATGGATCTTGTAGGGCAGGTTACTTCAACTTAGCCTTGACACTGTTGGAGAACTTCGAAAAACATGGACTTAACCTCAACCCATATTCATATAATGCAATCATCTATAAACTTTGTAAAGAAGGTTATCCAGAAAGATCATTGGAGCTCTTCCCAAGAATGCTTAAAAGAAATGTACTTCCGACAGTTGTTAATTACAGTACTCTTATATCAGGCTTTTCCAAACAGTTAAATATAAAAAGTGCTCTGAAGTTATTCACAAGAATGGTAGAAGTGGGAATCATTTTCAACACTGCCACATATACAATTATTATGCGCATACATTGCCATAGTCGCAAAATGCATAAAGCATATGGCATTTTTAAGGATATGAAAGAAAGGGGTTTGCATCTAGATCAGATTTCATATTCAACTTTAATAGCTGGCTTTTGTAATGATAGAGAATTTAAAAAGGCCTGGGCATTATTTGGAGAAATATCAAGGGAAGGCTCTTCGCCAAATGTATATACTTATACTTGTATGGTTGATGGATTTTGCAAGTCAAACCGGATAGATTTGGCCACGTGGCTGTTTGATAAAATGAACAGAGCTTTAGTTGTTCCTGATGTTGTAACTTACACTGTTCTCATTGCTTGGTACCATAAGCATGGGTACATAGATCAGGCATATAAGCTATATGACATAATGAAGGAAAAAGGTGTGTTGCCAGATGATATAACTCTTAATATTCTAGGTCTGAAGGCTGGTGCAGTTCAAGAAGGTTAG 2202 0.3842 MSLICVLGCVLLRRKVLTHRPCLFGLFFSSASSALISEDHVFDESPKSFASFVINRHTPHVAAKSRVYFPLVSRVFKSLSWSVAREVRFGRWVESHGFSHSINCFRIIVHTFALAGMHLEVFDLLSDIVGFCNETNYDIFKLFSALVDSPHHLERSGIVFDVLIKVFASNSMLENAIDVFVNAKHVGLEPGIRTCNFLFKCLVEANRVESVRWFFKELKDSGPSPNIYTYTIMMNFYCSDADMRRAAVVLGKIYQIGEKPTVVTYGTYIRGLCKVGDVEAALMLIHNLHKEKQLLNSHSFNAVIYGFCKRGEVCKALQVLVEMKKSGILPDVYSYSILIDAFCKKGDVMSSLSLMEEMKRSQVQPSIVSYTSLIHVLCKKNLIQNAVEIFRSIGASTMKYDQIIYETLIDGFCMQGDVDSAKKLLKEMTSYGLVPTAFSYSSLIKLYYKLGLYDQALGVFETMQSYGIWPNIIACNYIIDGSCRAGYFNLALTLLENFEKHGLNLNPYSYNAIIYKLCKEGYPERSLELFPRMLKRNVLPTVVNYSTLISGFSKQLNIKSALKLFTRMVEVGIIFNTATYTIIMRIHCHSRKMHKAYGIFKDMKERGLHLDQISYSTLIAGFCNDREFKKAWALFGEISREGSSPNVYTYTCMVDGFCKSNRIDLATWLFDKMNRALVVPDVVTYTVLIAWYHKHGYIDQAYKLYDIMKEKGVLPDDITLNILGLKAGAVQEG 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01226 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Spst2g01226 733 Gene3D Tetratricopeptide repeat domain 76 293 IPR011990 GO:0005515
Spst2g01226 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Spst2g01226 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 681 715 IPR002885 -
Spst2g01226 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Spst2g01226 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Spst2g01226 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Spst2g01226 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Spst2g01226 733 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 257 534 - -
Spst2g01226 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Spst2g01226 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Spst2g01226 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 646 680 IPR002885 -
Spst2g01226 733 Pfam PPR repeat 258 284 IPR002885 -
Spst2g01226 733 Pfam PPR repeat 363 391 IPR002885 -
Spst2g01226 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Spst2g01226 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Spst2g01226 733 NCBIfam pentatricopeptide repeat 404 436 IPR002885 -
Spst2g01226 733 NCBIfam pentatricopeptide repeat 438 470 IPR002885 -
Spst2g01226 733 NCBIfam pentatricopeptide repeat 299 332 IPR002885 -
Spst2g01226 733 NCBIfam pentatricopeptide repeat 613 647 IPR002885 -
Spst2g01226 733 NCBIfam pentatricopeptide repeat 648 681 IPR002885 -
Spst2g01226 733 NCBIfam pentatricopeptide repeat 683 716 IPR002885 -
Spst2g01226 733 NCBIfam pentatricopeptide repeat 263 292 IPR002885 -
Spst2g01226 733 NCBIfam pentatricopeptide repeat 579 611 IPR002885 -
Spst2g01226 733 NCBIfam pentatricopeptide repeat 545 576 IPR002885 -
Spst2g01226 733 NCBIfam pentatricopeptide repeat 508 541 IPR002885 -
Spst2g01226 733 NCBIfam pentatricopeptide repeat 333 366 IPR002885 -
Spst2g01226 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Spst2g01226 733 Gene3D Tetratricopeptide repeat domain 628 731 IPR011990 GO:0005515
Spst2g01226 733 Gene3D Tetratricopeptide repeat domain 296 413 IPR011990 GO:0005515
Spst2g01226 733 Gene3D Tetratricopeptide repeat domain 414 517 IPR011990 GO:0005515
Spst2g01226 733 Gene3D Tetratricopeptide repeat domain 518 627 IPR011990 GO:0005515
Spst2g01226 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 611 645 IPR002885 -
Spst2g01226 733 Pfam PPR repeat family 402 447 IPR002885 -
Spst2g01226 733 Pfam PPR repeat family 540 589 IPR002885 -
Spst2g01226 733 Pfam PPR repeat family 611 659 IPR002885 -
Spst2g01226 733 Pfam PPR repeat family 680 723 IPR002885 -
Spst2g01226 733 Pfam PPR repeat family 296 344 IPR002885 -
Spst2g01226 733 Pfam PPR repeat family 470 519 IPR002885 -
Spst2g01226 733 Pfam PPR repeat family 190 239 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01226 206 712 Glycosyltransferase AT1G05670 29.183 2.26e-67 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01226 - - gmx:100818511 1133.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01226 2 10827940 10830141 Spst2g01226 2 10827940 10830141 ECH