Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01220 ATGCTGGTGACAGGTCTTTTATTCACGCGGATTCGTGCTTGGTTGTTTGCAGTACGCGACGCTGGCACGTGCGACTCTATCGCAGGCACGGACCATCAAACCCTCTTAAATCCCGAGACGACTTTTTATTCTTCACTAAATTGCTCTTTACATTACTACTTGCAACACCACCAGAGCTTACCCCCGCGTTTCCGTCACCGGAGATTCTATCTGAAATCATTTCCCATGTCGATAAAAACTGTTAAAGTGGTTAATGTTTCCTTGGGAGCAAATGAACAAGACATTAAGGAATTCTTTTCATTTTCTGGTGATATTGAATATGTTGAACTGCAGAGCCATGATGAACGATCTCAAACTGCTTATATTACCTTCAAGAATTCACAGGGAGCTGAGACTGCTGTACTGCTTTCGGGAGCAACGATAGTGGATATGTCTGTTACGATAACTCTGGATCCAGATTACCAGCTTCCACCCGCTGCCTTTACATCATCTGAAATGGAAAGTCAAACTCCTGGTGGTGCTGAAGTTGCTTTACGGAAGGCAGAGGATGTGGTCTCTGGCATGCTAGCCAAGGGCTTTATCTTGGGGAAAGATGCTGTCAACAAAGCAAAGACTTTTGACGAGAAGCACCAGTTATCGTCCACAGCCTCCGCAAAAGTTGCATCTTTTGATCAGAAAATTGGGCTTAGTGAGAAAATAAGTGCTGGTGCTACAGTTGTGGGTGATAGAGTTCGAGAAGTGGATCAAAAATTTCAGGTTTCAGAAAAGACCAAATCAGCATTTGCAGCTGCAGAACAGACGGTCAGCAATGCTGGTTCTGCCATAATGAAGAATCGCTATGTACTTACTGGGGCATCCTGGGTTACAGGTGCTTTTAGTAAGGTTTCTAAGGCCGCTGGGGAAGTAGGACAGAAGACAAGAGAGAAAGTGGAGATTGCAGAAGAGCAACAGAAACGAAGTGTGGAAGATCAATATGCACAGGTCCTTTCTGAGGCCCCCAAAGCAGCTGAAGCAAGGGAACAGAAGCCTTCCAAGCCTGCTCCTGCTCAGGGTTTGATCCTTTGA 1065 0.4545 MLVTGLLFTRIRAWLFAVRDAGTCDSIAGTDHQTLLNPETTFYSSLNCSLHYYLQHHQSLPPRFRHRRFYLKSFPMSIKTVKVVNVSLGANEQDIKEFFSFSGDIEYVELQSHDERSQTAYITFKNSQGAETAVLLSGATIVDMSVTITLDPDYQLPPAAFTSSEMESQTPGGAEVALRKAEDVVSGMLAKGFILGKDAVNKAKTFDEKHQLSSTASAKVASFDQKIGLSEKISAGATVVGDRVREVDQKFQVSEKTKSAFAAAEQTVSNAGSAIMKNRYVLTGASWVTGAFSKVSKAAGEVGQKTREKVEIAEEQQKRSVEDQYAQVLSEAPKAAEAREQKPSKPAPAQGLIL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01220 354 MobiDBLite consensus disorder prediction 304 321 - -
Spst2g01220 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 141 IPR000504 GO:0003723
Spst2g01220 354 FunFam RNA recognition motif-containing protein 76 149 - -
Spst2g01220 354 MobiDBLite consensus disorder prediction 304 354 - -
Spst2g01220 354 SUPERFAMILY RNA-binding domain, RBD 61 151 IPR035979 GO:0003676
Spst2g01220 354 Gene3D - 76 149 IPR012677 -
Spst2g01220 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 153 IPR000504 GO:0003723
Spst2g01220 354 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 79 317 - -
Spst2g01220 354 SMART rrm1_1 80 149 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01220 Spst-Chr2 10800139 10803517 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01220 - - gmx:100809613 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01220 2 10800139 10803517 Spst2g01220 2 10800139 10803517 ECH