Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01046 ATGGTACACATCACTGCACCTGCACCTGCACCTGTGCCAACAGTACCAACCCACCACCTATTCTTCGACCAAAACCTTGATCTGAAAAACAACAACCCACGTACTTTACCTTCTCCCAACCATAAACTTGAGCTTCAACCGCCACTGCGCTACCCCAGTCACAGCTTAGCACATCCCCTTATTCCTCAAACAACAAATTTCACCAAGAGGAAGGAGATAGGGAAAAAGAAGAGAAAAAAGGCTACAACATCTGACATACTGTACTTGATGGACGCTCTGCCCTTTCCTATACCAATTGACATCTACACTTCTATGATAAAAGAATGCACTGTTTCCGGTGACCCAGAGACCGCCATTGAGTTGTACACTCACATTTCCAAGAGCGGTGTAAAACCCCCCTTGCCCTTCCTCAATCGGATTCTCATTATGTTTGTGTCCTGTGGTCTGTTGGAAAATGCACGCCAGATGTTTGACAAAATGCATCTGAGGGACTTCAACTCTTGGGCGACCTTATTTGTTGCGTACTATGATAATGCTGATTACGAAGCGGCTACGGCGGTTTTTGTTAACATGTTAGGCCAATTGGGTATGTCGCAATTTCCTCCGTGGATATGGGCTTGCCTTCTCAAGGCTTGTGCATGCACTTTGAATGTCTCTCTGGGAATGCAAGTTCATGGATGGTTGTTAAAGTTGGGTACTTGTGATCACGTGCTTCTGAGCAGCTCCTTGATAAACTTTTACGGGAGATTCACGTGTCTAGAAGATGCGAGTGCTGTCTTCAATGGGGTGTCGCGGCATAACACGCTGACTTGGACTGCTAAAATCGTTAGTGGTTGCAGGGAAAGACATTTCTCTGAGGTTTTTGGCGACTTCAGGGAGATGGGAACGCGAGGGGTGAAGAAGGACTGCTTCACGTTTTCTAGTGTTCTCAAGGCGTGTGGAAAGATGCTGAATCAGGAAAGATGTGGTGAACAAGTCCACAGTGATGGCATCAAACTTGGGTTGGTCTGGGATCACTATGTGCAGTGTAGTTTGATTGCCATGTATGGAAGATGTGGGTTGTTGAGAGAAGCAAAACAGGTGTTTGAGATGAGCCAAGAGGAGAGAAAGGTTGATTGTTGGAATGCTATGCTTATGGGTTACATCCAGAATGATTTGTACATTGAAGCTGTTAAGTTTCTGTATCATATGCAGGCAGCTGGAGTACAGCCGCGGGAATCTCTGCTTAAAAAATTAAGAATTGCTTGTGGAAGTATTACCTGCTCAAACATGAATTAA 1278 0.4523 MVHITAPAPAPVPTVPTHHLFFDQNLDLKNNNPRTLPSPNHKLELQPPLRYPSHSLAHPLIPQTTNFTKRKEIGKKKRKKATTSDILYLMDALPFPIPIDIYTSMIKECTVSGDPETAIELYTHISKSGVKPPLPFLNRILIMFVSCGLLENARQMFDKMHLRDFNSWATLFVAYYDNADYEAATAVFVNMLGQLGMSQFPPWIWACLLKACACTLNVSLGMQVHGWLLKLGTCDHVLLSSSLINFYGRFTCLEDASAVFNGVSRHNTLTWTAKIVSGCRERHFSEVFGDFREMGTRGVKKDCFTFSSVLKACGKMLNQERCGEQVHSDGIKLGLVWDHYVQCSLIAMYGRCGLLREAKQVFEMSQEERKVDCWNAMLMGYIQNDLYIEAVKFLYHMQAAGVQPRESLLKKLRIACGSITCSNMN 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01046 425 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 322 424 - -
Spst2g01046 425 Pfam PPR repeat 101 130 IPR002885 -
Spst2g01046 425 Pfam PPR repeat 344 366 IPR002885 -
Spst2g01046 425 Pfam PPR repeat 140 163 IPR002885 -
Spst2g01046 425 Pfam PPR repeat 373 402 IPR002885 -
Spst2g01046 425 Gene3D Tetratricopeptide repeat domain 74 199 IPR011990 GO:0005515
Spst2g01046 425 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 98 132 IPR002885 -
Spst2g01046 425 NCBIfam pentatricopeptide repeat 373 404 IPR002885 -
Spst2g01046 425 NCBIfam pentatricopeptide repeat 101 132 IPR002885 -
Spst2g01046 425 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 44 419 IPR046960 GO:0003723|GO:0009451
Spst2g01046 425 Gene3D Tetratricopeptide repeat domain 203 326 IPR011990 GO:0005515
Spst2g01046 425 Gene3D Tetratricopeptide repeat domain 327 419 IPR011990 GO:0005515
Spst2g01046 425 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01046 Spst-Chr2 9151456 9152733 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01046 47 420 Glycoside Hydrolase AT3G49170 27.062 2.16e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01046 - - gmx:100778405 721.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01046 2 9151456 9152733 Spst2g01046 2 9151456 9152733 ECH