Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00876 ATGACTAGTTCCTCTGGTGCCGCTCGGAAGAATCTCAGTAAGATTGCCTGTAATAGGCTTCAGAAAGAGCTCGTTGAGTGGCAGGTCAATCCCCCAACTGGTTTCAAGCACAAAGTTACAGACAATCTCCAGAGGTGGGTTGTTGAAGTGACTGGAGCTCCTGGAACACTCTACGCCAATGAGACCTACCAGCTTCAGGTCGATTTTCCCGAGAATTACCCCATGGAAGCTCCTCAGGTTATATTCTTGCATCCGGCCCCGCTGCATCCCCATATCTATAGCAACGGCCATATTTGTTTAGATATATTGTATGATTCTTGGTCTCCTGCCATGACAGTTAGTTCCATCTGCATCAGTATTCTCTCAATGCTTTCAAGCTCGACCACAAAGCAACGCCCTGAAGATAATGATCGCTATGTAAAGAACTGCAGAAATGGCAGATCGCCTAAGGAGACAAGGTGGTGGTTCCATGATGATAAAGTATAA 486 0.463 MTSSSGAARKNLSKIACNRLQKELVEWQVNPPTGFKHKVTDNLQRWVVEVTGAPGTLYANETYQLQVDFPENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTTKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00876 161 Pfam Ubiquitin-conjugating enzyme 19 154 IPR000608 -
Spst2g00876 161 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 15 139 - -
Spst2g00876 161 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 15 161 IPR000608 -
Spst2g00876 161 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 88 103 IPR023313 -
Spst2g00876 161 Gene3D Ubiquitin Conjugating Enzyme 15 161 IPR016135 -
Spst2g00876 161 FunFam probable ubiquitin-conjugating enzyme E2 16 13 161 - -
Spst2g00876 161 CDD UBCc 17 117 IPR000608 -
Spst2g00876 161 SMART ubc_7 18 161 - -
Spst2g00876 161 SUPERFAMILY UBC-like 5 126 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00876 Spst-Chr2 7398032 7402060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00876 1 112 Miscellaneous Gene Families AT2G33770 27.826 3.24e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00876 K10688 - gmx:100305572 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00876 2 7398032 7402060 Spst2g00876 2 7398032 7402060 ECH