Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00874 ATGGCTTCTTCCCTGTCCTCCGTCATCAACCAACCTCACATTGCTCAACGCTTCAAACTTCACCGTCCATCTTCTTTTGCCACTTTCACAATCTTCCACCACAAACGCAGACACAAGCACCAATACAACGTTTTCTGTCCATACCCATATACCTCATTGCCACGCTCTCAACCTCTCAATCTCATCATCGCTTCCAGAACTTTCTCTCATTCCAACACTTTCCGCCACCACTTCATCCCTCAAGCTACGCTCACTGCTTCCGAAGCTAAACCCCGCCTTGCATCAGATACTGAAGTTCCTCCCACTCGTCGAATATATCATGAGACTTATGGATGTCAAATGAATGTTAATGATATGGAGATCGTTCTTTCTATAATGGAAAAGGCCGGTTACAGTGAAGCTGTGAGTGTTCCCGAGAGTGCAGAAATAATATTCATCAATACCTGTGCTATTAGAGAAAACGCAGAACAGAAAGTATGGCAGAGGCTTAATTACTTTTGGTTTCTTAAGAGGCATTGGAAGAGCAATATTGCTACTGGAAGAGCACAGTCTCTGTCCCCTCCAAAAGTAGTGGTTTTGGGATGTATGGCTGAGAGGTTAAAGGAGAAGATACTTGATGCAGACAAAATGGTTGATGTTGTATGCGGACCTGATGCTTATAGGGATTTGCCGCGCTTACTGGAAGAGGTTGACTATGGTCAGAAAGGGATAAATACTCTCCTTTCACTTGAGGAAACTTATGCTGATATTAATCCAGTTCGAATCTCCAAAAATTCGGTTACTGCATTTGTCTCAGTGATGAGGGGCTGCAATAATATGTGCTCGTTTTGTATTGTTCCTTTCACTAGAGGCAGAGAGCGATCACGTCCTGTAGAGTCAATTGTGAGAGAGGTAGCTGAGCTTTGGAAAGAGGGTGTTAAGGAAGTAACGCTTCTTGGCCAGAATGTGAACAGCTACAACGATGCATCTGGGAGTGAGAGAGAGGTTGAATCAGGGTCCAATTGGCAACTTAGTGAAGGGTTTTCCAGTATTGCAAAGGTAAAAAAAATGGGCTTAAGGTTTTCTGATCTACTGGATCGTTTGTCATCAGAATTTCCTGAGATGCGATTCAGATTCACATCTCCACACCCTAAGGATTTTCCGGATGAGTTGCTTTATCTAATGCGAGACAGACATAATATATGCAAATTGATACATTTACCTGCACAAACTGGAAGCAGCAAAGTGCTGGATAGAATGAGAAGAGGATATACCAGAGAGGCTTACTTGGAACTTGTGCAAAAGATCCGGAGTATTATTCCTGATGTGGCTTTGAGCAGTGATTTCATTTGTGGATTTTGTGGAGAAACGGAGGAGGAACATTCTGAGACGTTGAGCCTAGTAAATGCTGTTAGTTATGATATGGCATTCATGTTTGCTTATAGCATGAGGGAGAAAACTCATGCCCACAGAAATTATGCTGATGATGTTCCTGAGGAAATTAAGCAGAGGAGGCTGGCTGAACTTATTGAGACTTTCCGCGAGAGCACGGGAAAGTGTTTTGACTCTCAGATTGGAACCACACAGCTTGTATTAGTGGAAGGACCCAATAGAAGAGCACCAGATACTGAGCTTATGGGCAAGAGTGACAAGGGCCATCGGGTGTTGTTTGTTAATATGCCAATCGCAGATAGGGAAGATGTGAATACAAAGCGAAATCCTGTGGTCGGTGATTATGTTGAAGTCCGCATAACAAGATCTACGAGGGCATCACTCTTTGGTGAAGCACTTGCTATAACTAAATTGAGTTCTTTTTACGATAATCTGGATAAAGCTGTTGCATGCAGCATGTAG 1833 0.431 MASSLSSVINQPHIAQRFKLHRPSSFATFTIFHHKRRHKHQYNVFCPYPYTSLPRSQPLNLIIASRTFSHSNTFRHHFIPQATLTASEAKPRLASDTEVPPTRRIYHETYGCQMNVNDMEIVLSIMEKAGYSEAVSVPESAEIIFINTCAIRENAEQKVWQRLNYFWFLKRHWKSNIATGRAQSLSPPKVVVLGCMAERLKEKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADINPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVREVAELWKEGVKEVTLLGQNVNSYNDASGSEREVESGSNWQLSEGFSSIAKVKKMGLRFSDLLDRLSSEFPEMRFRFTSPHPKDFPDELLYLMRDRHNICKLIHLPAQTGSSKVLDRMRRGYTREAYLELVQKIRSIIPDVALSSDFICGFCGETEEEHSETLSLVNAVSYDMAFMFAYSMREKTHAHRNYADDVPEEIKQRRLAELIETFRESTGKCFDSQIGTTQLVLVEGPNRRAPDTELMGKSDKGHRVLFVNMPIADREDVNTKRNPVVGDYVEVRITRSTRASLFGEALAITKLSSFYDNLDKAVACSM 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00874 610 ProSiteProfiles Radical SAM core domain profile. 256 512 IPR007197 GO:0003824|GO:0051536
Spst2g00874 610 NCBIfam tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 105 588 - -
Spst2g00874 610 SFLD methylthiotransferase 102 595 IPR005839 GO:0006400|GO:0016740|GO:0051539
Spst2g00874 610 SFLD B12-binding domain containing 182 482 - -
Spst2g00874 610 Gene3D tm_1862 like domain 258 516 IPR023404 -
Spst2g00874 610 ProSitePatterns Methylthiotransferase radical SAM domain signature. 264 284 IPR020612 GO:0051539
Spst2g00874 610 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 103 232 IPR013848 GO:0035596|GO:0051539
Spst2g00874 610 Pfam TRAM domain 515 590 IPR002792 -
Spst2g00874 610 Pfam Uncharacterized protein family UPF0004 104 216 IPR013848 GO:0035596|GO:0051539
Spst2g00874 610 SFLD CDK5RAP1 102 595 - -
Spst2g00874 610 ProSiteProfiles TRAM domain profile. 515 591 IPR002792 -
Spst2g00874 610 FunFam CDK5 regulatory subunit-associated protein 1 258 517 - -
Spst2g00874 610 Gene3D - 103 246 IPR038135 -
Spst2g00874 610 FunFam CDK5 regulatory subunit-associated protein 1 103 246 - -
Spst2g00874 610 Pfam Radical SAM superfamily 264 461 IPR007197 GO:0003824|GO:0051536
Spst2g00874 610 NCBIfam MiaB/RimO family radical SAM methylthiotransferase 104 586 IPR005839 GO:0006400|GO:0016740|GO:0051539
Spst2g00874 610 SFLD (dimethylallyl)adenosine tRNA methylthiotransferase (MiaB-like) 102 591 IPR006463 GO:0006400|GO:0016740|GO:0051539
Spst2g00874 610 PANTHER CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1 39 603 - -
Spst2g00874 610 SUPERFAMILY Radical SAM enzymes 254 508 - -
Spst2g00874 610 CDD Radical_SAM 268 494 - -
Spst2g00874 610 SMART MiaB 260 501 IPR006638 GO:0003824|GO:0051536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00874 - - gmx:100799544 1093.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00874 2 7370740 7373857 Spst2g00874 2 7370740 7373857 ECH