Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00870 ATGCATTATGTTCATGAGAGTGGTACCATGCTTGGCGCCTCCAGACGCGTAGTTGGATTCATTCCTCGGAGGTTACTATCAGTGCGCCAAGTGCATGGAGATGGGGATGCCGAAGAGCTTTTACGGTTTCACAAGAGCAGAGGCCAACATATTCTCGTCAACCCTCGAATTCTGGACACCATTGTTCGCAAATCCGCCATAAAACCCACAGACACTATCCTTGAAATCGGACCCGGCACCGGCAACCTTACCCTCAGGCTTCTCGAAGCAGCGCACAAGGTTGTAGCCTTCGAAATTGATCACCGCATGGTCCAGGTTCTCGAGAAGCGCGTTCTTCAACGTGGTTTCATAAATAAGCTCAGGGTTATAGAAAGAGATGCGATGAAAGCCCCGTTCCCGCGGTTTGATCTTGTTGTGGCCAACATTCCTTATCAGATATCTTCCCCTCTGATGATTAAACTGGTGTATGGGCCGACACCGTTTCGGAGTGCCACGCTTCTGCTTCAGAAAGAATTCGCTCGAAGGTTAATGGCTAATCCCGGTGACTCTGGGTCTAACCGGTTGTCGGTGAATGTGAAGCTTCTGGCTGATGTGGAGCTTGTGATGGATGTAAGCAAGAGGGACTTTCTCCCTTCCCCTAAAGTAGACTCTTCTGTGGTCATAATCCGCCCGAAGCCTCAGGTTCCCAATGTGGATCTTCGTGAGTGGAGAGCTTTCACCATGGTTTGTTTTAATAACAGGAACAAGACACTAGGGGCATCGTTTAAGAACAAGAGGAGAGTTTTGGAGTTGCTCAAAATCTCGAATGAATACAATGAATCTTCTCCCCACGAAGGTGATGATGCTCAAGATGAAGGAGAGTTTACCTCGTTCAAGGAAAAGATTATTGGGGTGCTTAGAACGGGAGAGTTTGAAGATAAAAGGCCTTCAAAACTTTCTTTTGAGGAGCTTCTGCATTTGCTCTCTTTGTTCAATCAATCTGGCATTTATTTTGGACACCGTGAACAGCTCAAGAGGGAAGATAAGTTTGATGCTGATGATGAATAG 1047 0.4699 MHYVHESGTMLGASRRVVGFIPRRLLSVRQVHGDGDAEELLRFHKSRGQHILVNPRILDTIVRKSAIKPTDTILEIGPGTGNLTLRLLEAAHKVVAFEIDHRMVQVLEKRVLQRGFINKLRVIERDAMKAPFPRFDLVVANIPYQISSPLMIKLVYGPTPFRSATLLLQKEFARRLMANPGDSGSNRLSVNVKLLADVELVMDVSKRDFLPSPKVDSSVVIIRPKPQVPNVDLREWRAFTMVCFNNRNKTLGASFKNKRRVLELLKISNEYNESSPHEGDDAQDEGEFTSFKEKIIGVLRTGEFEDKRPSKLSFEELLHLLSLFNQSGIYFGHREQLKREDKFDADDE 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00870 348 CDD AdoMet_MTases 72 151 - -
Spst2g00870 348 NCBIfam 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA 42 322 IPR011530 GO:0000179|GO:0006364
Spst2g00870 348 Gene3D - 229 332 - -
Spst2g00870 348 ProSiteProfiles rRNA adenine N(6)-methyltransferase family profile. 43 328 IPR001737 -
Spst2g00870 348 FunFam rRNA adenine N(6)-methyltransferase 43 227 - -
Spst2g00870 348 Pfam Ribosomal RNA adenine dimethylase 42 268 IPR001737 -
Spst2g00870 348 SMART rADcneu6 57 226 IPR020598 GO:0000154|GO:0000179|GO:0008649
Spst2g00870 348 ProSitePatterns Ribosomal RNA adenine dimethylases signature. 73 100 IPR020596 GO:0000154|GO:0000179|GO:0008649
Spst2g00870 348 Gene3D Vaccinia Virus protein VP39 43 227 IPR029063 -
Spst2g00870 348 Hamap Ribosomal RNA small subunit methyltransferase A [rsmA]. 41 272 IPR011530 GO:0000179|GO:0006364
Spst2g00870 348 PANTHER DIMETHYLADENOSINE TRANSFERASE 38 326 IPR001737 -
Spst2g00870 348 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 38 326 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00870 Spst-Chr2 7348228 7349390 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00870 K14191 - gmx:100790908 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00870 2 7348228 7349390 Spst2g00870 2 7348228 7349390 ECH