Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00714 ATGGTCTCCGAATCCGAACTCATTGGCCGCCTCCGCGAGTTCCTGCGGAGCTCCGACCTCAACACCACCACCACCGCCACCGTCCGCCGTCAGTTGGAGGTCGATTTCGGCATCGATTTATCCCAACGCAAGGCATTCATTAGGGAACAGGTGGACTTGTTCCTGCAGACCGAGCATAACCAAGAGCAACAAAAAGAAGACCAAAACGACGACGTACCAGAAGACCAAGAAGAAGAAGAAGAAGCACCTGATAATCCCGAGCAAAGCCAACCCTCCTATTCCAAGGAAGAATCCGGAGAAGAAGACGATAGTGACGAAGAGGAACGAGATAAACCTAAGCGTGCCAAAAATGTCAAGAAGAAAAAAAGCCGATCTAACAAGTTAGGTGATGAGGTAGTAAAGAAAAGAGGTGGTGGTTTTTGCAAATTATGTAGCCTGTCTCCACAACTTCAGGAATTCGTGGGAGTTCCAGAAATGGCCAGGACAGAGGTTGTTAAGCAATTATGGGCCTATATTAGGAAGCAAAATTTGCAAGACCCAAACAATAAACGAAATATAATTTGTGATGAGCAATTGCGGGCCCTTTTTAATGTCAGTTCCATCAACATGTTCCAAATGAATAAAGCATTGTCAAAGCATATCTGGCCATTGGGTTCAGATGATGTTGTCCAGGTGAAGTCCACACCAAAGGAAAAACAGAAGAAGCAAGAGAGAGATGATGATCCAGATGAGCCAAAAAGAAAGGAAAAACGGCAGAAGGGAGGAGGGAAATCAGGTTTTCTTGCTCCACTTCAGCTATCTGATGCCCTTGTAAACTTCCTTGGTACTGGAGAAAGTGAGTTACCAAGAACAGATGTTATAAAAAGAATGTGGGATTACATTAAAGGAAACAACCTTCAGGATCCTTCTAACAAGAGGCAAATAATATGTGACGAGAAGCTAAAAGAACTCTTTGATGTCGACTCCTTCAATGGCTTCACAGTTACAAAACTGCTGGCACCTCATTTTATAAAGACACATCGGTGA 1026 0.4405 MVSESELIGRLREFLRSSDLNTTTTATVRRQLEVDFGIDLSQRKAFIREQVDLFLQTEHNQEQQKEDQNDDVPEDQEEEEEAPDNPEQSQPSYSKEESGEEDDSDEEERDKPKRAKNVKKKKSRSNKLGDEVVKKRGGGFCKLCSLSPQLQEFVGVPEMARTEVVKQLWAYIRKQNLQDPNNKRNIICDEQLRALFNVSSINMFQMNKALSKHIWPLGSDDVVQVKSTPKEKQKKQERDDDPDEPKRKEKRQKGGGKSGFLAPLQLSDALVNFLGTGESELPRTDVIKRMWDYIKGNNLQDPSNKRQIICDEKLKELFDVDSFNGFTVTKLLAPHFIKTHR 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00714 341 Gene3D SWIB/MDM2 domain 254 341 IPR036885 -
Spst2g00714 341 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 6 217 - -
Spst2g00714 341 SMART swib_2 260 341 IPR019835 -
Spst2g00714 341 SMART swib_2 140 219 IPR019835 -
Spst2g00714 341 CDD SWIB-MDM2_like 264 336 - -
Spst2g00714 341 MobiDBLite consensus disorder prediction 225 261 - -
Spst2g00714 341 SUPERFAMILY SWIB/MDM2 domain 257 339 IPR036885 -
Spst2g00714 341 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 1 56 IPR014876 -
Spst2g00714 341 MobiDBLite consensus disorder prediction 68 85 - -
Spst2g00714 341 ProSiteProfiles SWIB/MDM2 domain profile. 259 338 IPR003121 -
Spst2g00714 341 FunFam Upstream activation factor subunit 134 222 - -
Spst2g00714 341 SUPERFAMILY DEK C-terminal domain 3 56 - -
Spst2g00714 341 Gene3D - 1 59 - -
Spst2g00714 341 Pfam DEK C terminal domain 2 55 IPR014876 -
Spst2g00714 341 ProSiteProfiles SWIB/MDM2 domain profile. 139 216 IPR003121 -
Spst2g00714 341 CDD SWIB-MDM2_like 144 214 - -
Spst2g00714 341 Gene3D SWIB/MDM2 domain 134 221 IPR036885 -
Spst2g00714 341 MobiDBLite consensus disorder prediction 59 129 - -
Spst2g00714 341 MobiDBLite consensus disorder prediction 225 255 - -
Spst2g00714 341 Pfam SWIB/MDM2 domain 263 336 IPR003121 -
Spst2g00714 341 Pfam SWIB/MDM2 domain 143 214 IPR003121 -
Spst2g00714 341 SUPERFAMILY SWIB/MDM2 domain 136 217 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00714 Spst-Chr2 5963217 5967538 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Spst2g00714 SWIB 5.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00714 K15223 - gmx:100786835 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00714 2 5963217 5967538 Spst2g00714 2 5963217 5967538 ECH