Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00496 ATGGCGCCAGTGTCAGCTCTTGCAAAGTACAAACTTGTGTTCTTGGGTGATCAGTCTGTGGGAAAAACCAGCATCATCACTCGTTTCATGTACGACAAATTTGACAACACTTATCAGGCCACGATTGGTATTGATTTTTTATCAAAAACTATGTACCTTGAAGATCGAACTGTTCGGCTGCAGCTGTGGGATACTGCCGGACAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGGGACTCATCAGTTGCTGTCATTGCTTATGATGTTGCAAGTCGTCAAACTTTCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTGAGAGAGGCAGTGATGTTATTATTGTACTTGTTGGGAACAAAACTGACCTTGTGGATAAGAGGCAAGTCTCTACAGAGGAAGGGGAAGCTAAGTCTCGTGAACTAAACGTCATGTTTATTGAAGCTAGTGCCAAAGCTGGCTTTAATATAAAGGCGCTCTTTCGAAAAATTGCTGCTGCATTACCTGGAATGGAAACACTATCTTCCACAAAACAAGAAGACATGGTTGACGTGAACCTAAGATCTTCTGCTGGCCATGACTCTCAACCTGATGGAGGAGGATGTGCTTGCTGA 621 0.43 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIAYDVASRQTFLNTSKWIEEVRSERGSDVIIVLVGNKTDLVDKRQVSTEEGEAKSRELNVMFIEASAKAGFNIKALFRKIAAALPGMETLSSTKQEDMVDVNLRSSAGHDSQPDGGGCAC 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00496 206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 181 IPR027417 -
Spst2g00496 206 CDD Rab6 10 170 - -
Spst2g00496 206 SMART rho_sub_3 12 172 IPR001806 GO:0003924|GO:0005525
Spst2g00496 206 ProSiteProfiles small GTPase Ras family profile. 5 206 IPR001806 GO:0003924|GO:0005525
Spst2g00496 206 SMART ran_sub_2 15 206 - -
Spst2g00496 206 FunFam Probable Ras-related protein Rab-6A 6 201 - -
Spst2g00496 206 Gene3D - 6 198 IPR027417 -
Spst2g00496 206 ProSiteProfiles small GTPase Rho family profile. 3 176 - -
Spst2g00496 206 ProSiteProfiles small GTPase Rab1 family profile. 5 206 - -
Spst2g00496 206 NCBIfam small GTP-binding protein domain 9 166 IPR005225 GO:0005525
Spst2g00496 206 PRINTS Transforming protein P21 ras signature 51 73 - -
Spst2g00496 206 PRINTS Transforming protein P21 ras signature 113 126 - -
Spst2g00496 206 PRINTS Transforming protein P21 ras signature 10 31 - -
Spst2g00496 206 PRINTS Transforming protein P21 ras signature 33 49 - -
Spst2g00496 206 PRINTS Transforming protein P21 ras signature 148 170 - -
Spst2g00496 206 PANTHER RAS-RELATED PROTEIN RAB 10 181 - -
Spst2g00496 206 Pfam Ras family 11 169 IPR001806 GO:0003924|GO:0005525
Spst2g00496 206 SMART rab_sub_5 10 173 - -
Spst2g00496 206 SMART ras_sub_4 7 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00496 Spst-Chr2 4037990 4041196 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00496 K07893 - gmx:100790511 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00496 2 4037990 4041196 Spst2g00496 2 4037990 4041196 ECH