Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00493 ATGGACTCGCAGCAGAGCAATCTATTCGACACCGCTTCTCAGCCCGACACCGGCAACGACGCCTACACCTTCCTCGAATTCAACACGCAGGGTGAGGATTTCGACTACCCTGAGTTCCGAGACCCGATTAGGTCGCCGGTGGCGTGGCCAACTCCGTCCGATTCGCTTGTGGACCAGTCGGAGCGCTCCGCCGCTGGGGGACCCGGCTCTGATCACCAGTCCGATGCCTCGCCTGTCTCCGCGGCTCCCGGCAGCGCTCCCAAGGGCGGCCGGTCTGGTAGCGGCGGTGGAAACAGCAGCCAAATGGTTGATGCGCTTGCGGCGGGGATGAGCGGGTTGAATTTCGAGGACACTGGGGATGATGATAACTATGAGTATGGCAAAGGAGATTTTACTGAACACGCTTGCCGCTATTGCGGGGTTTCCAATCCCGCGTGTGTTGTAAGGTGCAATGTGCCTTCGTGTCGGAAGTGGTTCTGTAATTCTCGGGGGAACACTTCGGGATCGCATATCGTCAACCACCTGGTACGGGCTAAACACAAGGAAGTCTGTCTACACAAAGATAGTCCGTTGGGAGAAACAATTCTTGAATGCTACAATTGTGGATGTCGTAATGTTTTTCTCCTTGGATTTATATCTGCAAAGACAGAAAGTGTAGTTGTCCTACTTTGTCGTGAACCTTGCTTGAGTGTTAATGCCTTGAAGGACATGAATTGGGACCTTAGTCAATGGTGCCCATTGATTGATGATAGGTGTTTCTTGCAGTGGCTTGTCAAGATCCCATCTGAACAGGAGCAGTTAAGAGCTCGCCAAATAAGTGCACAGCAAATAAACAAGGTGGAAGAGTTGTGGAAAACAAATCCTGATGCTTCTTTTGAGGACCTTGAGAAGCCTGGTGTAGATGATGAACCTCAGTCTGTGGCTTTGAAATATGAAGATGCATATCAGTATCAAAATGTATTTGCGCCTCTTATTAAGCTTGAAGCGGATTATGATAAGATGATGAAAGAATCACAAAGCAAGGACAATGTCACTATTCGATGGGATATTGGTCTTAATAAGAAGCGTGTTGCCTATTTTGTATTTCCAAAGGAAGATAATGAGTTGCGGCTTGTACCTGGTGATGAGTTACGATTGCGTTATTCTGGTGATGCTGCTCATCCTGCGTGGCAGTCTGTGGGTCATGTGATTAAGCTAACAGCACAAGAAGAAGTTGCACTTGAACTTCGTGCTAGTCAGCAGGGGGTTCCGGTTGATGTTAACCATGGTTTCAGTGTTGATTTTGTCTGGAAAAGTACAAGCTTTGATAGGATGCAGGGAGCTATGAAAACCTTTGCTGTGGATGAGACAAGTGTCAGTGGGTATATTTATCATCACTTACTGGGTCATGAAGTTGAGGTTCAGATGGTTCGCAATGCTTTGCCTCGTCGTTTTGGCGCACCTGGGCTCCCAGAGCTGAATGCATCTCAAGTGTTTGCTGTCAAGAGTGTTCTTCAGCGGCCAATTAGTTTGATTCAAGGACCACCTGGAACTGGTAAGACCGTAACTTCTGCAGCACTTGTATATCACATGGCTAAGCAAGGTCAGGGACAGGTTTTGGTTTGTGCACCTAGTAATGTAGCTGTGGACCAGCTAGCTGAAAAGATAAGTGCTACTGGATTAAAGGTTGTGAGGCTTTGTGCAAAGTCAAGGGAAGCTGTCAGTTCTCCTGTTGAGCATTTAACTCTCCACTATCAGGTACGACATCTTGACACATCTGACAAGAGTGAACTTCATAAGTTGCAACAGCTGAAGGATGAGCAAGGTGAACTTTCCAGCAGTGATGAGAAAAAATACAAAGCACTTAAGCGAGCAACAGAGAGGGAGATTTCTCAGAGTGCTGATGTGATATGCTGTACATGTGTTGGGGCTGGAGATCCTCGGCTTGCAAATTTTAGATTCCGCCAGGTTGACATGCAAACCCTTGTGCTTATTGACGAGTCTACTCAAGCAACTGAACCTGAGTGCCTCATACCTTTGGTCCTTGGAGCAAAGCAGGTTGTTCTTGTTGGCGATCATTGTCAGCTTGGTCCTGTTATTATGTGCAAGAAAGCAGCCCGTGCTGGATTAGCCCAGTCACTTTTTGAACGGCTTGTTCTACTTGGTGTTAAACCAATTAGGTTGCAGGTTCAGTATCGAATGCATCCATGCCTTTCAGAATTTCCCTCAAACAGCTTCTATGAAGGCACCCTGCAAAATGGAGTCACTGTTAATGAAAGGCAATCTTCAGGAATTGATTTTCCCTGGCCAGTGCCAAACCGTCCCATGTTTTTCTATGTTCAGATGGGACAAGAGGAGATAAGTGCAAGTGGGACATCTTATTTAAATAGGACTGAGGCGGCAAATGTTGAAAAGATTGTAACTACTTTCTTAAAAAGTGGTGTTGTTCCAAGTCAGATTGGCGTGATAACACCTTATGAGGGACAAAGAGCTTATATTGTGAACTACATGTCAAGAAATGGTGCTCTCAGGCAACAGCTGTACAAGGAGATAGAGGTTGCTAGTGTTGATTCTTTTCAAGGAAGGGAGAAAGACTACATCATTCTTTCTTGTGTCAGAAGTAATGAACATCAGGGCATTGGTTTCCTGAATGATCCTAGGAGGCTCAATGTTGCTCTAACACGAGCAAGATACGGTATTGTTATCCTGGGAAACCCTAAAGTTTTGAGCAAGCAGCCTCTCTGGAATAGTTTATTGACTCACTACAAGGAACATGAGTGTTTAGTTGAAGGGCCTTTAAATAACTTGAAGCAAAGTATGGTTCAGTTTCAGAAACCCAAGAAGATTTACAATGAACGAAGGCTATTTTATGGGGGTGGACCTGGAATTGCGGCTAATGATAATTTTGGTTCTGTTGGATCTGGAGCTGGAACAAGTTCAGATCGAAGGAGCAGCCGAGGAAGGGGATCTTATATACCTCCCGGTCCACCAAATGGAACTCATAAGCCTGGAGTGCATCCTGCTGGTTATCCTGTGCCAAGGGTTCCCTTGCCTCCCTTTCATGGTGGTCCCCAATCTCAACCATATGCAATTCCATCTCGTGGGGCTGTTCATGGACCTGTTGGAGCAGTTCCTCATGTTCCATCTCCGGGTAGTCGTGGATTTGGGGCTGGTAGAGGTAATTCTGGTGCTCCAATTGGCAATCATCTTCCACACCAACAAGGCACCCAACAGCCCATTGGGAATATTGGTTCTACCTTTAACTTCCCAGCTCTAGAGAATCCTAACAGCCAGCCATCTGTTGGTGGTCCATTATCTCAACCTGGTTTTGCCAACAATATACCAGTTCAAGGGTCCGGCCAGTCATTTCGAGATCAATTTTCTATGCCTGGAATGTCCCAGGACTTTTTGGGTGATGACTTTAAAAGCCAGGGATCTCATGTTCCTTATAATGTTACTGATTTCTCTACTCAGGGTGTAGGGGTTTATCCTTTCCATTCATTAAATTCTATCAGTTACGTGTTCGTGTTCATTTGTTGTTTTTCTACTGACGCTTTGACCGCCTTAAGGCTTCTCAAAGTGGATATGCTGTCGATTTTGCTACACAAGGGGCACAAGGTGGATTCCCCGGGAATTTCCTTAACCAGAATTCTCAAGCTGGTTATTCTCGTTTTGGTTCAGGAAACGACTTCATGTCTCAGGACTACATGGGCCATGGATCACAAGGCCTTTTCACTCAGGTGGGATTCAGTGATCCTTTACAAGATGATTCAACTCAAAGCCATTTCGGTGTGGCGAATGCCAACCCTCTTCAGTCCCAGGTTTTTTGTAGTTCCAACCTTTTTATTATTAGAGATGTAA 3840 0.4594 MDSQQSNLFDTASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLVDQSERSAAGGPGSDHQSDASPVSAAPGSAPKGGRSGSGGGNSSQMVDALAAGMSGLNFEDTGDDDNYEYGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVDMQTLVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNERRLFYGGGPGIAANDNFGSVGSGAGTSSDRRSSRGRGSYIPPGPPNGTHKPGVHPAGYPVPRVPLPPFHGGPQSQPYAIPSRGAVHGPVGAVPHVPSPGSRGFGAGRGNSGAPIGNHLPHQQGTQQPIGNIGSTFNFPALENPNSQPSVGGPLSQPGFANNIPVQGSGQSFRDQFSMPGMSQDFLGDDFKSQGSHVPYNVTDFSTQGVGVYPFHSLNSISYVFVFICCFSTDALTALRLLKVDMLSILLHKGHKVDSPGISLTRILKLVILVLVQETTSCLRTTWAMDHKAFSLRWDSVILYKMIQLKAISVWRMPTLFSPRFFVVPTFLLLEM 1279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00493 1279 MobiDBLite consensus disorder prediction 964 979 - -
Spst2g00493 1279 Pfam Type III restriction enzyme, res subunit 491 553 IPR006935 GO:0003677|GO:0005524|GO:0016787
Spst2g00493 1279 CDD 1B_UPF1-like 340 428 IPR040812 -
Spst2g00493 1279 Pfam RNA helicase UPF1, 1B domain 339 429 IPR040812 -
Spst2g00493 1279 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 494 626 IPR014001 -
Spst2g00493 1279 CDD SF1_C_Upf1 727 916 IPR047187 -
Spst2g00493 1279 MobiDBLite consensus disorder prediction 1 102 - -
Spst2g00493 1279 Gene3D - 571 623 - -
Spst2g00493 1279 CDD DEXXQc_UPF1 485 726 - -
Spst2g00493 1279 FunFam regulator of nonsense transcripts 1 homolog 340 429 - -
Spst2g00493 1279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 482 950 IPR027417 -
Spst2g00493 1279 MobiDBLite consensus disorder prediction 1002 1018 - -
Spst2g00493 1279 Gene3D - 726 937 IPR027417 -
Spst2g00493 1279 Pfam AAA domain 586 694 IPR041677 GO:0004386
Spst2g00493 1279 FunFam Regulator of nonsense transcripts 1 726 937 - -
Spst2g00493 1279 PANTHER DNA2/NAM7 HELICASE FAMILY 248 937 IPR045055 -
Spst2g00493 1279 MobiDBLite consensus disorder prediction 1 26 - -
Spst2g00493 1279 CDD ZBD_UPF1-like 135 257 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Spst2g00493 1279 Gene3D - 340 429 - -
Spst2g00493 1279 Pfam RNA helicase (UPF2 interacting domain) 134 287 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Spst2g00493 1279 MobiDBLite consensus disorder prediction 960 1097 - -
Spst2g00493 1279 Pfam AAA domain 704 899 IPR041679 -
Spst2g00493 1279 Gene3D - 449 725 IPR027417 -
Spst2g00493 1279 ProSiteProfiles Upf1 cysteine-histidine-rich (CH-rich) domain profile. 128 287 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Spst2g00493 1279 MobiDBLite consensus disorder prediction 1060 1097 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00493 Spst-Chr2 4008121 4018334 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00493 K14326 - gmx:100795594 2219.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00493 2 4008121 4018334 Spst2g00493 2 4008121 4018334 ECH