Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00378 ATGGCCGATCTACTCGCTTGGCTCGTCTCCTTCTTCCTCCTTATTGCCTTGCTTGTTCTCGTCACTTACCAGCTAATGTGCCTGGCAGACCTAGAATTTGATTATATAAATCCTTATGACTCCTCTACTCGAATAAATATAGTGGTTTTCCCAGAGTTTGCTACGCAAGCTGTCCTATGCTTCTTCTACCTAGTTACCAGGCATTGGATTATGGCACTCTTTTGTGTTCCTTACACTTTTTACAACATCAGATTGTACAGGCAAAGAAGGCATTTGGTTGATATAACTGAGATATTCAACATGCTCCCTTGGGAAAAGAAGCAAAGGCTTGTCAAACTCTTCTACCTTCTTTTTACCCTTTTCCTCTCTGTATTTTGGAGGGGAAATTCAAGGGAGATTTCTTTCGAAGGAAGATTGAACCAGCATCCACATTGCAATTCATGTTCATTCTTTGAATCAGAACAGAAGTATATTGATTCTTAG 483 0.4017 MADLLAWLVSFFLLIALLVLVTYQLMCLADLEFDYINPYDSSTRINIVVFPEFATQAVLCFFYLVTRHWIMALFCVPYTFYNIRLYRQRRHLVDITEIFNMLPWEKKQRLVKLFYLLFTLFLSVFWRGNSREISFEGRLNQHPHCNSCSFFESEQKYIDS 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00378 160 PANTHER CORNICHON-RELATED 6 125 - -
Spst2g00378 160 SMART Cornichon_2 4 125 IPR003377 GO:0016192
Spst2g00378 160 Pfam Cornichon protein 5 125 IPR003377 GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00378 Spst-Chr2 2976476 2978247 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00378 K20368 - gmx:100780362 222.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00378 2 2976476 2978247 Spst2g00378 2 2976476 2978247 ECH
Spst3g04361 3 95249826 95252360 Spst2g00378 2 2976476 2978247 PCT