Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00376 ATGGCTTGCGCGCACTACCATTGCCCCGCGAGTCTGATATTCCGGTGCGACACTGGCGCTCGTTTGTGTCAGACTTTGACGCCAAAGAATCCTCAGAGTTCATGGCTTGGAACTAAACTTAGGGTTTCCCCATGCAGTCTCAATCTCAGAACTCACGTGTCTGTTTCCCGGCGACGCCCCCTCGCCGCCACCGTCTCCTTCAGCCTCCCCACAGCAAAGCCAGAGCGTGCTTCTCCTGGTCAAGAAATTCCCAAATGGTCTTCCAAGGCTATAAAATCGTTTGCAATGGCTGAATTGGAGGCGAGAAAACTTAAGTATCCGACTACCGGCACTGAAGCCCTGCTCATGGGGGTTCTCATCGAGGGTACTAATCTAGCAGCTAAGTTTTTGCGAGCCAATGGAATTACACTTCTCAAGGTTCGAGATGAAACTGTGAAGTTACTTGGAAAAGCTGATTTGTTTTTCTTCAGCCCTGAGCATCCTCCACTGACTGATGAAGCTCAGAGAGCCCTTGATTGGGCTGTTGATAAAAAAATAAAATCTGTTGACGGCGGGGAACTTACCACAGCGCACATACTTCTTGGCATTTGGTCCGAAGTGGATTCTCCTGGTCACAAGATTCTGTCCAACCTTGGCTTCGATGATGAAAAAGCTAAAGAGCTTGATTCCTCAATTTCGAAACCTGGATGTACGGATGATTGA 702 0.4872 MACAHYHCPASLIFRCDTGARLCQTLTPKNPQSSWLGTKLRVSPCSLNLRTHVSVSRRRPLAATVSFSLPTAKPERASPGQEIPKWSSKAIKSFAMAELEARKLKYPTTGTEALLMGVLIEGTNLAAKFLRANGITLLKVRDETVKLLGKADLFFFSPEHPPLTDEAQRALDWAVDKKIKSVDGGELTTAHILLGIWSEVDSPGHKILSNLGFDDEKAKELDSSISKPGCTDD 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00376 233 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 25 232 IPR044217 -
Spst2g00376 233 ProSiteProfiles Clp repeat (R) domain profile. 83 228 IPR004176 -
Spst2g00376 233 SUPERFAMILY Double Clp-N motif 85 218 IPR036628 -
Spst2g00376 233 Pfam Clp amino terminal domain, pathogenicity island component 186 224 IPR004176 -
Spst2g00376 233 Pfam Clp amino terminal domain, pathogenicity island component 97 149 IPR004176 -
Spst2g00376 233 Gene3D - 85 233 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00376 Spst-Chr2 2948710 2955247 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00376 - - gmx:100527844 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00376 2 2948710 2955247 Spst2g00376 2 2948710 2955247 ECH