Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00349 ATGAGTCAAAACAGGGCTTGTGTTTGGTTTTGCTTGAGTTTTGTGGGAATTGGTTTTAACTACTTCTTTTGTAAAATTGTGAATTGGTTGGCGACTTGGATTGGATTCACCATTCGAGGGTTTGGCCTACGAAATGGTATTGGAGCTTGGCGTATGTTGCCTCTGGGTGAAGAACTTGGTGGCTATACCAGCATGATAATTACCGGTGTCGGGCAGGTCACTGGATCTACTTTGGGACTTCCAAATGCATCTGATGAGTGTGCCACTTGTGGCTCCAAAGACAAAAGGATCTGTGAAGGTCATTTTGGAGTAATCAAATTTCCTTTCCCCATACTCCATCCGTATTTTATGTCAGAGATTGCACAAATCTTGAATAATATTTGCCCTGTTTGTAAATCTATTCGACATAAATCTAAGGGTGCTCAATTAATATTTGGAATCAAGCGGTCTATTGGTTGCAAATATTGTTCTGGAAATGGGACGAGTCGTTACCCAACAATGAAGTTTAAATTTTCATCCAATGATCTCTATAGAAGAACTGCAATTATTGTTGAAGTGAATGATAAGGCCTCAAAGAAAACTTTAGGACGAAGCCTACCTGCTGATTATTGGGATTTTATTCCTTATGATGCTCAACAAGAAGATAATTATGTAAATAGAAGAGTTTTATCGCCAGGGCAGGTTACTTCTTTGTTGAATGATGTTGATCCAAAATTCATCGAAAAGTATATTCCAAGAAAGAATTTGATGAGTCTTAATTGCTTTCCAGTGACTCCAAATTGTCATCGTGTAACAGAAGTCCCATACGCAATTTCTAATGGAAACCGATTGAGTTTTGATGACAGGACTCGATCTTGCAAGAAATTAGTTGATTTCAGGGGTACAGCCAATGAGTTAAGTTCTCGTCTAAATCCTGATAAAACACCTATTAGTATTTTTGCTGATATTAAAAAAAGGAAAGTTGCAGAAAATGCTTGCAATTCTTCTGGTTTAAGATGGATAAAAGATGTGGTTCTGGGAAAACGCAATGATAGTATATTCCGTGCTGTGGTTGTTGGTGATCCATACCTTGAGCTTAGTGAAATTGGCATACCTTGTCATATTGCTGAAAGTTTACAGGTTTCTGAATATGTGAACAGGCAGAATTTGGAAAAGCTGCTTTATTGTTGTGAGCTACGCTTGTTAGAGAAGGGACAGATAAATGTCTGCAGAAAGGGTTGTTCAATTCATTTGTTTAAAAAGGAAGATCTACAGATAGGAGACCAATTTTATAGACCTCTTGTTGATGGGGATAAGGTTCTGATAAATAGGCCCCCTTCCATACATCAACATTCTATGATTGCTCTCACAGTTAGGGTCCTTCCAATATCTTCTGTAGTGTGTATTAACCCACTCTGTTGTTCTCCACTTCGTGGTGATTTTGATGGTGATTGCCTTCACGGGTATATTCCACAATCAGTTAGTGCTAGAGTTGAGCTTAATGAGCTTGTTGCTTTAGATAGGCAATTGTTTAATGGGCAAAGTGGTAGAAATTTGCTTTCCCTTTCCGAGGATAGTTTAACTGCTGCATATTTGCTGATGGAAGATGGGGTCATTTTAGATGTTTACCAAATGCAGCAGCTTCAAATGCTTTGTAACAAAAGCTTAACTCCTCCCGCAATTGTTAAAGCTCCTTCAAGTAACCGCTCATTTTGGAGCGGCAAGCAATTGTTTAGCATGCTTTTGCCATCTGATTTTGACTATTCATTTCCTTTTGATGGCGTTGTTGTTAGACATGGGGAGCTTGTATCTTCTTTTGAGGCTTCTGGTTGGCTACGTGATACTGACTGCAATGTTTTCCAGAGTATTGTGGAACATTTTCAAGGGAAATCTCTAAACTTTTTGTATGCGGCGCAGAAAGTTCTGTATGAGTGGTTATCTATGACTGGTTTTAGTGTTTCACTCTCAGATTTGTACCTCTGTTCCGATTCCTATGCACGAAAAAACATGATTGAGGAAATATTTTATGGCTTACAAGATGCAGAGCAGGCGTGTAATTTCAAGCAGCTATTGTTAGATCCTTATTGTGATTTTTTGTCTGGATGTCACGAAGAGAGTGAAAATTCTATGATTATCGATGTAGATAGTCTGAATTATGAAAGACAAATATCTGCTGCTCTCGGTCAAGCGTCAGTTGATGCTTTTAGGCATGTTTTTCGTAATATTCAAAGTTTAGCTGACAAATATGCAGGTAAAGACAACACTTTTCTTGTCATGAATAAGGCTGGAAGCAAGAGTAGTTTAGTGAAATTAGTGCAACATTCCATGTGTCTTGGGATGCAAAATTCTCTGGTCCGCTTGTCATACAAACTACCCCGTCATCTTTCATGTGCTGCTTGGAATAGTCAAAAGAGGCTTGATTCAATCCAGATATGTTCTAGTACCCTTGATTCCGTTCAGTCTTACATTCCCACTGCTGTGGTTGAAAGCTCTTATCTAACTGGGTTGAATCCACTCGAATGTTTTGTTCATTCCATGACAACCCGAGCTAGTGGTTTCAGTGAAAATGCCGATGTTCCTGGAACGTTAACACGGAAACTTATGTTCTTCATGCGTGATTTGTTTGCTGCGTATGATGGAACGGTTAGAAATTTATATGGTAATCAACTTATTCAGTTTCCTTATGAGATTGAAGAAAACAATTCATCTGATAAAAGTTTCCAAGAGTATGCTATTGGTGGTGAACCTGTTGGGGCACTTTCTGCTTCTGCAATTTCAGAAACTGGATACAGTGCTTTGGATCAACCAGTTAGTCTACTCGAAACATCACCTTTGCTGAATTTGAAAAATGTTCTTGAGTGTGGTTCAAGGAAAAAAAATGGTGACCAGACTGCTTCTTTATTTTTGTCTGAAAAAGTTGGAAAACAGAGACATGGGTTTGAATATGCAGCCTTAGAAGTTAAGAATTATTTGGAAAAATTGCTGTTCTCAAAAATTGTTTCTACTGTGATGATAATATTCACCCCACATGATAGCAGCAGCGTAGAGAAATACAGTCCTTGGGTTTGCCACTTTCATTTAAACAAGGAAATTGTAATGAGAAGGAAGTTAAGAGTGCATTCTATCATTGACTCTCTTTACCAGAGATATTACTCCCAGAGAAAAGAACCAAAAGTTTGTTTTACCAACTTGAAAATAACAAGCAAAAAGTGTTCTGTTGATTCCACAACTAAGGAAGGTGAAGCCACTTCTATAGATAAACACGAGGGTAATGATTGCATCACAGTCACAATTGTTGAAAACTCTGACAATTCTATACAACTGGATTCTGTTCGGGACTTTGTGATACCTTTTATTCTAGGAACAACAATAAAAGGATTTGCGGACATAAAAAAGGTTGATATTCTCTGGAATAATCAATCAAAAGTAACAAATTCTTACAATGGTTCTTCTGGTGAACTGTACTTGAGGGTTACTGTGTCCACCGTGGGTAACAGTGGAAGATTCTGGGGTGTGCTTCTTAATCATTGTCACAAGATAATGCAGATAATTGACTGGCCACGTAGTCATCCAGATAACATAAATCATCTTACATCAGCCTATGGAATTGATGTAGGGTGGCAATATTATTACAAGGGTTTGGAATCTGCAATATGTGATACTGGAAAGTCCATCCTTCCTAAGCATCTGCGTCTTCTTGCCAATAGTCTCTCAGCTAGTGGAGAATTTGTGGGATTAAATGCTAAAGGCATGGCACAGCAAAGACAACATGCGTCCGTTTCATCACCATTTGTGCAAGCTTGCTTTTCTAATCCGGGTAGGAGCTTTATAAAAGCTGCCAAGTCTGGAGTCACGGATAATCTCCAGGGCAGCCTGGATGCACTGGCTTGGGGAAACTGTCCATCTATGGGGACAAGTGGACTGTTTGATATCATATATTCAGAGAAGGGTCACGAGGTAGCTAAGTCTGTAGATGTGTATAAGCTGCTAGAAGTCAGTCTTGACAAGCCCAACAATAAGATTGGTATTCATTCTCGCAACAATTATTCTGACAAATGCGGTTCTGAGTTTAGGCATAAAAATGGTTATGCCTTGAAAGAGGGAAAACGGTGGAAAAACATTTTGAGAAATTTTCTGACGGTAAATGATATTCAGAAGCTGACTTTTGCTTCAAGGTCCATATTGAACAAGTATTCGATTGATGAGCTGCTGAGTGAGAGTGACAGGTCAACAATGCTAAGGGTTTTGAATTTTCATCCTCGTAGAAGTGAGAAGTTAGGCATTGGACCGCAGGACATTAAGGTTGGATGGCATCCTAAATTTAAGGATAGCCGGTGCTTCCATATAGTACGAACTGATGGGACTGTTGAAGATTTTTCATACCGCAAATGCATTCTTGGTGCTCTAGAGATCGTTGATCCAAATATGTTGAAGATCCAGAAGAAAAGATGGTCAGGACGTGATGACGCATGTCCGGAATCAATGGTAGAGAGCACTGTTCTCTTTTGCGAGTTTAGAGTTGTGTTATTAGCATTACTCCAGCTAAAAGGTGGAAAGATTTTGAAAGCTTCTTTTGTTGTGTTATACTATTTCAAAGCTGGGTGGTATAGCTCTATGGGTTTTGCTGGTCTGGTAGAGGCAGTGCAGCAGCACATTTTGAAAGAACTGAGATAA 4653 0.3899 MSQNRACVWFCLSFVGIGFNYFFCKIVNWLATWIGFTIRGFGLRNGIGAWRMLPLGEELGGYTSMIITGVGQVTGSTLGLPNASDECATCGSKDKRICEGHFGVIKFPFPILHPYFMSEIAQILNNICPVCKSIRHKSKGAQLIFGIKRSIGCKYCSGNGTSRYPTMKFKFSSNDLYRRTAIIVEVNDKASKKTLGRSLPADYWDFIPYDAQQEDNYVNRRVLSPGQVTSLLNDVDPKFIEKYIPRKNLMSLNCFPVTPNCHRVTEVPYAISNGNRLSFDDRTRSCKKLVDFRGTANELSSRLNPDKTPISIFADIKKRKVAENACNSSGLRWIKDVVLGKRNDSIFRAVVVGDPYLELSEIGIPCHIAESLQVSEYVNRQNLEKLLYCCELRLLEKGQINVCRKGCSIHLFKKEDLQIGDQFYRPLVDGDKVLINRPPSIHQHSMIALTVRVLPISSVVCINPLCCSPLRGDFDGDCLHGYIPQSVSARVELNELVALDRQLFNGQSGRNLLSLSEDSLTAAYLLMEDGVILDVYQMQQLQMLCNKSLTPPAIVKAPSSNRSFWSGKQLFSMLLPSDFDYSFPFDGVVVRHGELVSSFEASGWLRDTDCNVFQSIVEHFQGKSLNFLYAAQKVLYEWLSMTGFSVSLSDLYLCSDSYARKNMIEEIFYGLQDAEQACNFKQLLLDPYCDFLSGCHEESENSMIIDVDSLNYERQISAALGQASVDAFRHVFRNIQSLADKYAGKDNTFLVMNKAGSKSSLVKLVQHSMCLGMQNSLVRLSYKLPRHLSCAAWNSQKRLDSIQICSSTLDSVQSYIPTAVVESSYLTGLNPLECFVHSMTTRASGFSENADVPGTLTRKLMFFMRDLFAAYDGTVRNLYGNQLIQFPYEIEENNSSDKSFQEYAIGGEPVGALSASAISETGYSALDQPVSLLETSPLLNLKNVLECGSRKKNGDQTASLFLSEKVGKQRHGFEYAALEVKNYLEKLLFSKIVSTVMIIFTPHDSSSVEKYSPWVCHFHLNKEIVMRRKLRVHSIIDSLYQRYYSQRKEPKVCFTNLKITSKKCSVDSTTKEGEATSIDKHEGNDCITVTIVENSDNSIQLDSVRDFVIPFILGTTIKGFADIKKVDILWNNQSKVTNSYNGSSGELYLRVTVSTVGNSGRFWGVLLNHCHKIMQIIDWPRSHPDNINHLTSAYGIDVGWQYYYKGLESAICDTGKSILPKHLRLLANSLSASGEFVGLNAKGMAQQRQHASVSSPFVQACFSNPGRSFIKAAKSGVTDNLQGSLDALAWGNCPSMGTSGLFDIIYSEKGHEVAKSVDVYKLLEVSLDKPNNKIGIHSRNNYSDKCGSEFRHKNGYALKEGKRWKNILRNFLTVNDIQKLTFASRSILNKYSIDELLSESDRSTMLRVLNFHPRRSEKLGIGPQDIKVGWHPKFKDSRCFHIVRTDGTVEDFSYRKCILGALEIVDPNMLKIQKKRWSGRDDACPESMVESTVLFCEFRVVLLALLQLKGGKILKASFVVLYYFKAGWYSSMGFAGLVEAVQQHILKELR 1550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00349 1550 Pfam Protein of unknown function (DUF3223) 1386 1458 - -
Spst2g00349 1550 FunFam DNA-directed RNA polymerase subunit 1372 1463 - -
Spst2g00349 1550 SMART rpolaneu7 248 527 IPR006592 GO:0003677|GO:0003899|GO:0006351
Spst2g00349 1550 Gene3D - 335 506 - -
Spst2g00349 1550 Gene3D - 1369 1460 - -
Spst2g00349 1550 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 71 1307 - -
Spst2g00349 1550 Pfam RNA polymerase Rpb1, domain 1 77 288 IPR007080 GO:0003677|GO:0003899|GO:0006351
Spst2g00349 1550 Pfam RNA polymerase Rpb1, domain 2 340 497 IPR000722 GO:0003677|GO:0003899|GO:0006351
Spst2g00349 1550 PANTHER DNA-DIRECTED RNA POLYMERASE 76 1305 IPR045867 GO:0003899|GO:0006351
Spst2g00349 1550 Gene3D RNA polymerase II, clamp domain 68 149 IPR044893 -
Spst2g00349 1550 CDD RNAP_IV_RPD1_N 64 876 IPR040403 -
Spst2g00349 1550 Pfam RNA polymerase Rpb1, domain 3 504 651 IPR007066 GO:0003677|GO:0003899|GO:0006351
Spst2g00349 1550 Gene3D RNA polymerase Rpb1, domain 3 507 654 IPR042102 -
Spst2g00349 1550 Gene3D RNA polymerase ii 373 425 - -
Spst2g00349 1550 Gene3D - 694 829 IPR038120 -
Spst2g00349 1550 Pfam RNA polymerase Rpb1, domain 4 728 778 IPR007083 GO:0003677|GO:0003899|GO:0006351
Spst2g00349 1550 FunFam DNA-directed RNA polymerase subunit 507 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00349 Spst-Chr2 2715952 2733009 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00349 K16250 - gmx:100796185 2368.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00349 2 2715952 2733009 Spst2g00349 2 2715952 2733009 ECH