Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00285 ATGATGAGCGATAACCAACCTCAATTACTGTCCAAGATTGCCACTGGCAATGGCCATGGAGAGGACTCCCCTTACTTTGATGGGTGGAAGGCCTATGAAGATGATCCCTTTCATCCCACCAAGAATCCTAACGGGGTTATCCAAATGGGTCTTGCAGAAAATCAGCTTGCTTCGGACTTGGTTCAGCATTGGTTAGCGAATAATCCTGGGGCTTCCATTTGCACACCAGAAGGAGTGCGAGATTTCAAGGCCATTGCTAACTTTCAGGATTATCATGGTCTTCCGGAGTTCAGAAATGCAGTGGCTAAATTCATGGGAAGAACGAGAGGAAATAGAGTAAAGTTCGACCCTGAGCGTATTGTTATGAGCGGTGGAGCAACTGGAGCACACGAGGTGACTGCCTTTTGTTTGGCAGACCCCGGCGATGCATTTTTGGTCCCCACACCTTATTATGCAGGTTTCGACAGGGATTTGAGGTGGAGAACGGGGGTTCAACTCGTTCCAGTAATCTGCGAAAGCTCTAACGATTTCAAGCTGACAAGGAAAGCGTTGGAAGAGGCGTACGAGAAAGCCAAAGAAGACAACATCAGAGTAAAGGGGTTGCTAATTACCACTCCATCAAACCCACTGGGAACCATCATGGACCGACAAACTCTAAGAACAGTATTGGGTTTTGTCAACGAAAAACGCATCCACCTAGTAAGCGACGAAATATACGCGGGTACAGTTTTTTGCCACCCTGGTTTCACGAGCATCGCGGAGGTAATAGAGGAAGACAAAGACATCGAATGTGACCGTGACCTTATCCACATTGTTTATAGTCTTTCCAAGGACATGGGGTTCCCTGGCTTCAGAGTTGGCATCATATACTCTTACAACGACGCAGTGGTGAATTGCGCTCGCAAAATGTCTAGCTTTGGGTTAGTGTCCACGCAGACACAATATCTCATGGCGTCGATGCTTTCTGATGATGAGTTTGTGACAGGGTTTCTTGAAGAGAGTGCGAAAAGGCTTGCGAAAAGGTATGGAGTTTTTTGTAGGGGTCTTGGGCAAGTTGGTATAAAGTGCCTGGCGAGCAATGGTGGACTCTTTCTGTGGATGGATTTGCGTGGTCTTTTGAAGAAGGCAACGTTTGAGGCGGAAATGGAACTGTGGAGAGTGATCATTCACCAAGTTAAGATCAATATTTCTCCTGGCTCTTCCTTTCACTGCTCTGAGCCAGGGTGGTTTAGGGTATGCTATGCCAACATGGATGATAGAGCCGTGGAGGTTTCTTTGGCAAGAATGCGCACCTTCGTGCATCAGAACACCGAAGCCAAGAAGAAATCTTGCTGCCATAGAAAGTTGAGGCTAAGCTTCTCATCCAGAAGGTTGGATGAGTTCTTGGTGTCACCTCACTCCCCTTTTCCTCAATCACCTCTAGTTAAAGCCTCCACTTGA 1440 0.4715 MMSDNQPQLLSKIATGNGHGEDSPYFDGWKAYEDDPFHPTKNPNGVIQMGLAENQLASDLVQHWLANNPGASICTPEGVRDFKAIANFQDYHGLPEFRNAVAKFMGRTRGNRVKFDPERIVMSGGATGAHEVTAFCLADPGDAFLVPTPYYAGFDRDLRWRTGVQLVPVICESSNDFKLTRKALEEAYEKAKEDNIRVKGLLITTPSNPLGTIMDRQTLRTVLGFVNEKRIHLVSDEIYAGTVFCHPGFTSIAEVIEEDKDIECDRDLIHIVYSLSKDMGFPGFRVGIIYSYNDAVVNCARKMSSFGLVSTQTQYLMASMLSDDEFVTGFLEESAKRLAKRYGVFCRGLGQVGIKCLASNGGLFLWMDLRGLLKKATFEAEMELWRVIIHQVKINISPGSSFHCSEPGWFRVCYANMDDRAVEVSLARMRTFVHQNTEAKKKSCCHRKLRLSFSSRRLDEFLVSPHSPFPQSPLVKAST 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00285 479 Gene3D - 69 323 IPR015421 GO:0003824
Spst2g00285 479 SUPERFAMILY PLP-dependent transferases 19 433 IPR015424 -
Spst2g00285 479 CDD AAT_like 87 430 - -
Spst2g00285 479 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 274 287 IPR004838 GO:0003824|GO:0009058|GO:0030170
Spst2g00285 479 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 10 433 - -
Spst2g00285 479 Gene3D Aspartate Aminotransferase, domain 1 35 428 IPR015422 GO:0003824
Spst2g00285 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 141 162 - -
Spst2g00285 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 268 292 - -
Spst2g00285 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 300 323 - -
Spst2g00285 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 82 98 - -
Spst2g00285 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 49 75 - -
Spst2g00285 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 195 219 - -
Spst2g00285 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 231 254 - -
Spst2g00285 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 119 139 - -
Spst2g00285 479 Coils Coil 174 201 - -
Spst2g00285 479 Pfam Aminotransferase class I and II 47 425 IPR004839 GO:0009058|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00285 Spst-Chr2 2181645 2184245 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00285 K20772 - gmx:100793020 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00285 2 2181645 2184245 Spst2g00285 2 2181645 2184245 ECH
Spst2g00285 2 2181645 2184245 Spst3g01065 3 14009765 14012060 PCT