Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00248 ATGGCCTCCGAAGCAAAGCCTGCCAAACCTACTACTCACCAGCTTCTCAGCATCTGCAAGTCTCTCGTCGCCGGTGGAGTCGCCGGAGGAGTGCATGTACCAAATGGATCACGAACTGCTGTGGCTCCTCTGGAGAGATTGAAGATTCTGCTGCAGGTTCAAAATCGTCAAAATATAAAATACAACGGAACAATTCAAGGCTTAAAATATATATGGAAAACTGAGGGTTTTAGAGGATTGTTTAAAGGAAACGGAACTAACTGTGCTCGTATTGTCCCAAATTCCGCAGTAAAGTTCTTTAGCTATGAGCAAGCTTCCAAGCTCCCTCTAATTGTGCTTAATACATTCTGCAGGGGTATCTTATGGCTCTATCAGCAGCAACCTGGAAATGGTGTACGTAAATCATTTGCTATAATGGCATTGCTTTGTAAGGAAATGTCACCAAAGGAATCAACCCCCTCTAGCAGCAAAGAAGCTCAGCTCACTCCTATTCTGCGTCTTGGAGCTGGAGCATGTGCCGGAATCATTGCCATGTCTGCCACTTATCCAATGGACATGGTGCGAGGAAGGCTAACAGTCCAGACAGAAGCATCTCCTCGTCAATACAGAGGAATTTACCATGCTCTTTCAACAGTCTTCAGGGAAGAAGGCGCTCGAGCTCTGTACAAAGGCTGGCTACCTTCAGTCATAGGAGTTATACCATATGTGGGTCTTAATTTTTCCGTATATGAGTCTCTCAAAGACTGGTTGATTCGATCTAAACCGTTTGGAATAGCTCAAGACTCTGAGCTAAGTGTGACCACAAGGCTTGCTTGTGGTGCTGCTGCTGGAACTGTTGGCCAAACTGTGGCTTATCCCCTTGATGTCATTCGCCGAAGAATGCAAATGGTGGGTTGGAAAGATGCTGCTCCAGTAGTCGCTAGTGAGGGGAAGAGCGTAGTTGAATATACTGGCATGGTTGATGCCTTCAGGAAAACTGTGCATCATGAAGGATTTGGAGCATTATACAAAGGCTTAGTTCCCAATTCAGTGAAGGTGGTCCCTTCCATAGCTATTGCTTTTGTGACATACGAGATGGTCAAGGACATTCTTGGAGTAGAAATTAGAATATCCGACTGA 1119 0.454 MASEAKPAKPTTHQLLSICKSLVAGGVAGGVHVPNGSRTAVAPLERLKILLQVQNRQNIKYNGTIQGLKYIWKTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKLPLIVLNTFCRGILWLYQQQPGNGVRKSFAIMALLCKEMSPKESTPSSSKEAQLTPILRLGAGACAGIIAMSATYPMDMVRGRLTVQTEASPRQYRGIYHALSTVFREEGARALYKGWLPSVIGVIPYVGLNFSVYESLKDWLIRSKPFGIAQDSELSVTTRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWKDAAPVVASEGKSVVEYTGMVDAFRKTVHHEGFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDILGVEIRISD 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00248 372 ProSiteProfiles Solute carrier (Solcar) repeat profile. 264 363 IPR018108 -
Spst2g00248 372 Pfam Mitochondrial carrier protein 162 252 IPR018108 -
Spst2g00248 372 Pfam Mitochondrial carrier protein 263 364 IPR018108 -
Spst2g00248 372 Pfam Mitochondrial carrier protein 17 108 IPR018108 -
Spst2g00248 372 Gene3D Mitochondrial carrier domain 12 366 IPR023395 -
Spst2g00248 372 PRINTS Mitochondrial carrier protein signature 273 295 IPR002067 GO:0055085
Spst2g00248 372 PRINTS Mitochondrial carrier protein signature 222 240 IPR002067 GO:0055085
Spst2g00248 372 PRINTS Mitochondrial carrier protein signature 21 34 IPR002067 GO:0055085
Spst2g00248 372 ProSiteProfiles Solute carrier (Solcar) repeat profile. 16 108 IPR018108 -
Spst2g00248 372 SUPERFAMILY Mitochondrial carrier 14 359 IPR023395 -
Spst2g00248 372 PANTHER SOLUTE CARRIER FAMILY 25 17 366 - -
Spst2g00248 372 ProSiteProfiles Solute carrier (Solcar) repeat profile. 161 249 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00248 Spst-Chr2 1922009 1928559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00248 22 367 EF-hand Containing Proteins AT5G51050 34.582 1.84e-57 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00248 K14684 - gmx:100784834 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00248 2 1922009 1928559 Spst2g00248 2 1922009 1928559 ECH