Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00036 ATGGAGGGAACGGAGGCCGTAACGAATGGCGATGGCGATGGCGATGGCGGTGATCGTCCATGGCAATCTTACCACACTGTTTACACAACCGGTAAAGCAGGAATGGAAGGGGTGGACAAGGAGAAAGTGCAAAGAGTAGTTTACGAAATGAGTAAAGGATCCAAATATTTTGAAAACGAGGAACGCAAGGAAGCTTTTATTAACCAGAAAATTGACAACCTGCGAATTCAGTATGCTAAGCTCACACAAGCAGACTTGGCCCATTATCACAAGGTGGCTGATAGAAGAATTGTTGAGCTAGAAGCTTCGCGTGACCTTTCGAGGATTTGGTTACATGTAGATATGGATGCTTTCTATGCTGCTGTTGAGACTTTAAGTAACCCTACGTTACAGGGCAAGCCAATGGCCGTTGGAAGCATGTCCATGATATCCACTGCCAACTATGAGGCCCGGAAATTCGGAGTTCGTGCTGCCATGCCTGGGTTCATTGCACGTAAGCTATGTCCCGAATTGATCTTTGTCCCAATAGATTTCAAGAAGTATACCCATTATAGTGATTTGACTAGAAAAGTTTTCCGGATGTACGATCCCAATTTCATTGCTGGTAGCCTGGATGAAGCATACCTTGATATAACCGAAGTTTGCAAAGAAAGGAATGCCAAAAGTGAAGAAATTGCCCAAGAACTCAGAGCTGGTGTTTATGAAGAGACTGGTCTCACATGTAGTGCTGGAGTGGCACCAAATCGCTTACTTGCTAAGGTTTGTTCAGACATAAACAAGCCAAATGGACAGTATGTTTTGCCAAATGACCGCATGGCTGTTATGACCTTTGTATCCTCCCTTCCTATCAGAAAGATTGGGGGCATCGGTAAGGTCACAGAACATATTTTAAAGGAAGTTTTTGGGATTAACACATGTGAGCAGATGCTGGAGAAGAGTAGCTACCTTTATGCACTTTTCTCTCAGTCAACAGCAGAATTTTTTTGCTCTGTAGGTTTAGGTCTTGGGCAGACAGGATCTCCCCAAGTAAGATTTCGGAAAAGTATTAGTAACGAAAGAACATTTTCTGCCACCGAAGATGAAGTGCTGTTGCATAAAAAATTGGTGGAGCTTGCTGAAATGCTAGCAACCGACATGCAAAAAGAGGGTCTTTGTGGACGAACGTTGACTCTTAAACTGAAAACTGCTTCTTTTGAGGTTCGGACTAGAGCTGTGACTTTACAGCAGTACATCAGCTCGAGTGTGGATATCTTGAAGCATGCTAAAAAGTTACTAAAAGCTGAGCTTCCTATTTCAGTAAGATTGATAGGACTTAGAGTATCGCACTTTAACGGAGATAGGTGTTCTGATCCTACACAGAAGACCATTACCAACTTCATTACTACGGGAGATGCCAATAGAAATTGTAGTTATTTTCCAGATGTTGCAGATCATGACTCTGTCAGTGATGCAGAAACTAGTCTTTCCATTGACAGTCGGCAAACAACAATTCAACTTGATTGGAGAGATCCTTTTGTTGGTAACTATTTGTCAGATGTAGATTACCAAAGCTGTGTGTTCCAGAAAAATGGTGTAGAAGAGGTGAAAACATCTAGTAATGATGTTACAAGTTCTCACCAGAGTGGATTTACAGAAGCACCGGGATCAACTTCTTTCCAGGGGCAGTTTGAAGGCATAAACGTGAATAATGAGTCTAAGCTCCTGGAGGATGAGAGAAATTCTTGTTCTCAGGAGACGACAATGTTGTGGTTGAATGACTACAAATGTTCACTTTGTGGAATAGAACTACCTCCAAGTTTTGTTCCGGAAAGATTGGAGCACTCTGATTTTCATCTTGCTGAAAAGCTTCAAAAGGAAGAATCTAGGATTCACCTGCCATCTGTTCCGAGTCGAAGTCGGAGTCAGAAGGATGGAATCGCTAGACAAAGCAAATCCAAGAGGCAAAAGTTGTCGCAGAAAGAAGGCAAATATACACCCATTGATTATTTTTTTGCTAAAAAGGAATCCTAG 2010 0.4224 MEGTEAVTNGDGDGDGGDRPWQSYHTVYTTGKAGMEGVDKEKVQRVVYEMSKGSKYFENEERKEAFINQKIDNLRIQYAKLTQADLAHYHKVADRRIVELEASRDLSRIWLHVDMDAFYAAVETLSNPTLQGKPMAVGSMSMISTANYEARKFGVRAAMPGFIARKLCPELIFVPIDFKKYTHYSDLTRKVFRMYDPNFIAGSLDEAYLDITEVCKERNAKSEEIAQELRAGVYEETGLTCSAGVAPNRLLAKVCSDINKPNGQYVLPNDRMAVMTFVSSLPIRKIGGIGKVTEHILKEVFGINTCEQMLEKSSYLYALFSQSTAEFFCSVGLGLGQTGSPQVRFRKSISNERTFSATEDEVLLHKKLVELAEMLATDMQKEGLCGRTLTLKLKTASFEVRTRAVTLQQYISSSVDILKHAKKLLKAELPISVRLIGLRVSHFNGDRCSDPTQKTITNFITTGDANRNCSYFPDVADHDSVSDAETSLSIDSRQTTIQLDWRDPFVGNYLSDVDYQSCVFQKNGVEEVKTSSNDVTSSHQSGFTEAPGSTSFQGQFEGINVNNESKLLEDERNSCSQETTMLWLNDYKCSLCGIELPPSFVPERLEHSDFHLAEKLQKEESRIHLPSVPSRSRSQKDGIARQSKSKRQKLSQKEGKYTPIDYFFAKKES 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00036 669 MobiDBLite consensus disorder prediction 622 654 - -
Spst2g00036 669 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 344 442 IPR036775 GO:0003684|GO:0006281
Spst2g00036 669 Gene3D - 28 114 - -
Spst2g00036 669 FunFam DNA polymerase kappa subunit 27 117 - -
Spst2g00036 669 Pfam impB/mucB/samB family 113 257 IPR001126 GO:0006281
Spst2g00036 669 FunFam DNA polymerase kappa subunit 171 265 - -
Spst2g00036 669 Pfam Ubiquitin-Binding Zinc Finger 586 619 IPR041298 -
Spst2g00036 669 FunFam DNA polymerase IV 343 450 - -
Spst2g00036 669 Gene3D - 115 265 IPR043128 -
Spst2g00036 669 MobiDBLite consensus disorder prediction 1 23 - -
Spst2g00036 669 SUPERFAMILY DNA/RNA polymerases 85 337 IPR043502 -
Spst2g00036 669 Pfam impB/mucB/samB family C-terminal domain 346 448 IPR017961 GO:0003684|GO:0006281
Spst2g00036 669 Hamap DNA polymerase IV [dinB]. 107 456 IPR022880 GO:0003887
Spst2g00036 669 MobiDBLite consensus disorder prediction 637 654 - -
Spst2g00036 669 PIRSF DNA_pol_eta 449 668 - -
Spst2g00036 669 PIRSF DNA_pol_eta 222 498 - -
Spst2g00036 669 PIRSF DNA_pol_eta 102 225 - -
Spst2g00036 669 Coils Coil 57 77 - -
Spst2g00036 669 ProSiteProfiles Zinc finger UBZ3-type profile. 582 619 IPR041298 -
Spst2g00036 669 Gene3D - 127 175 - -
Spst2g00036 669 FunFam DNA polymerase kappa 251 339 - -
Spst2g00036 669 Gene3D - 344 449 IPR036775 GO:0003684|GO:0006281
Spst2g00036 669 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 21 664 - -
Spst2g00036 669 CDD PolY_Pol_IV_kappa 111 443 IPR022880 GO:0003887
Spst2g00036 669 FunFam Polymerase (DNA directed) kappa 120 172 - -
Spst2g00036 669 Gene3D - 266 339 - -
Spst2g00036 669 ProSiteProfiles UmuC domain profile. 110 290 IPR001126 GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00036 Spst-Chr2 348792 353418 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00036 K03511 - gmx:100816973 1115.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00036 2 348792 353418 Spst2g00036 2 348792 353418 ECH