Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00034 ATGGGAATCCGATCGGTGTTTGATGGCGGCGAGCTGAGAAGGGAATTTGAGAAAAGCGGAATTGAGGGAAAATTCGTTCCAATAATTTGGAAGCATCTGATTGCGAGTATTGCGAAGCAACAAATGCAAGATTCGGATTGGGATTGGGAGAAAAAAGTTCCGTCATTGCCATCTTCAGCATACTCTGTGCTTCGTTCCAACTTGGGAGAAACAACCCCTCTCTCTTCTTCTCTTCACTCCGTTTTCCACTCTGCCGACAACCTCACCTCCAAACTCCTCATCAAGCTCCACAATGGAGCATTCGTGGAGGCCGTGATAATGAGGTATGATACTCGTTTGGGCAAATATGCTGGCAAACCCCGTCCCGGTGGGCTACGAGCAACTTTGTGTATTTCATCTCAGGTAGGATGCAAAATGGGTTGCAAATTCTGTGCCACTGGATCCATGGGATTCAAAAATAACCTATCCTCTGGAGAAATTGTGGAACAGCTCGTCCATGCTTCTGCTTTCTCACAAATCCGTAATGTTGTCTTCATGGGAATGGGAGAGCCTCTCAACAACTATTCTGCTGTGGTAGAAGCGGTTCGCATCATGACTGGATTGCCATTTCAGTTGTCCTTGAAAAGGATTACCATATCGACGGTTGGCATCATTCATGCTATCAACAAGCTTCATAATGACCTGCCTGGTTTGAACTTGGCAGTCTCACTGCATGCACCAGCCCAAGACATCCGTTGCCATATAATGCCTGCTGCTCGTGCTTTCCCTTTGGAAAAACTTATGAATTCACTGCAAGAATATCAAAGAAAAAGTCTGCAGAAAATAATGATTGAATACATAATGCTTGATAGAGTGAATGATGAAGAGCAGCATGCCCACCAATTGGGAAAACTGTTAGAGACATTTCAAGTGGTGGTGAACTTAATACCTTTCAACTCTATTGGTATCTTGAGTCAATTCAAACCTACCAGTGAACAGAAAGTCTCAAAATTTCAGAAAATTCTCAGAGGTACCTATAATATTCGAACAACAGTTCGGAAGCAGATGGGTGAAGACATAAGTGGTGCTTGTGGACAATTGGTGGTTAACATACCTGACAAGTCTCATGCCAATACAGAACCCCTAACAGACATAGAAGATCTTGTTATTTGA 1152 0.4349 MGIRSVFDGGELRREFEKSGIEGKFVPIIWKHLIASIAKQQMQDSDWDWEKKVPSLPSSAYSVLRSNLGETTPLSSSLHSVFHSADNLTSKLLIKLHNGAFVEAVIMRYDTRLGKYAGKPRPGGLRATLCISSQVGCKMGCKFCATGSMGFKNNLSSGEIVEQLVHASAFSQIRNVVFMGMGEPLNNYSAVVEAVRIMTGLPFQLSLKRITISTVGIIHAINKLHNDLPGLNLAVSLHAPAQDIRCHIMPAARAFPLEKLMNSLQEYQRKSLQKIMIEYIMLDRVNDEEQHAHQLGKLLETFQVVVNLIPFNSIGILSQFKPTSEQKVSKFQKILRGTYNIRTTVRKQMGEDISGACGQLVVNIPDKSHANTEPLTDIEDLVI 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00034 383 Pfam Radical SAM superfamily 132 290 IPR007197 GO:0003824|GO:0051536
Spst2g00034 383 FunFam 23S rRNA methyltransferase 76 367 - -
Spst2g00034 383 SUPERFAMILY Radical SAM enzymes 128 300 - -
Spst2g00034 383 PANTHER 23S RRNA METHYLTRANSFERASE 7 373 IPR040072 -
Spst2g00034 383 Gene3D Aldolase class I 77 368 IPR013785 -
Spst2g00034 383 Pfam 4Fe-4S single cluster domain 136 221 - -
Spst2g00034 383 SFLD adenosine C2 methyltransferase (RlmN-like) 64 369 IPR004383 GO:0006364|GO:0008173
Spst2g00034 383 NCBIfam 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 63 361 IPR027492 GO:0030488|GO:0070475
Spst2g00034 383 PIRSF Cfr 12 377 IPR004383 GO:0006364|GO:0008173
Spst2g00034 383 ProSiteProfiles Radical SAM core domain profile. 123 352 IPR007197 GO:0003824|GO:0051536
Spst2g00034 383 CDD Radical_SAM 136 337 - -
Spst2g00034 383 SFLD Radical SAM 64 369 IPR007197 GO:0003824|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00034 Spst-Chr2 341275 343453 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00034 - - gmx:100804869 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00034 2 341275 343453 Spst2g00034 2 341275 343453 ECH