Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00025 ATGGTCATGGCTATGTCTCTGTCTCTTGGACTCTTGTCTTCTTCCATTCTCCCTCCTGAAACCCACACTGCCACCTTCATGAGACCTTCTCATTCTGCTTCTTCTTCTGGTTTGCGCATGGTGCGAACTGTTACCTCTTGCACCGTCTCTCACTCCGACCAAGGCACCCGCAAAATCCGTGGTATCATGAAACCTAGCAAAGTCACTCCCGAGATGGCAGCCATAGTGGGCGTTAAAGAGATTGCCAGAACCCAAGCCCTCAAACGGATTTGGGCTTACATTAAGGACAACAATCTTCAGGACCCTGAAGACAAGAGGACTATTAATTGTGATGAGAAGCTAAAGAAGGTGTTCGAAGGGAGAGACCGAGTTGGTATGCTTGATGTTGCTCGCTTGATTAGCCCTCATTTCCTTAAAAGTGAAAGTTAA 429 0.4732 MVMAMSLSLGLLSSSILPPETHTATFMRPSHSASSSGLRMVRTVTSCTVSHSDQGTRKIRGIMKPSKVTPEMAAIVGVKEIARTQALKRIWAYIKDNNLQDPEDKRTINCDEKLKKVFEGRDRVGMLDVARLISPHFLKSES 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00025 142 ProSiteProfiles SWIB/MDM2 domain profile. 61 139 IPR003121 -
Spst2g00025 142 Gene3D SWIB/MDM2 domain 56 142 IPR036885 -
Spst2g00025 142 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 52 139 - -
Spst2g00025 142 Pfam SWIB/MDM2 domain 64 137 IPR003121 -
Spst2g00025 142 SUPERFAMILY SWIB/MDM2 domain 58 140 IPR036885 -
Spst2g00025 142 CDD SWIB-MDM2_like 67 137 - -
Spst2g00025 142 SMART swib_2 62 142 IPR019835 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00025 Spst-Chr2 307365 308448 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Spst2g00025 SWIB 1.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00025 - - gmx:100306198 183.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00025 2 307365 308448 Spst2g00025 2 307365 308448 ECH