Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00020 ATGTTCCTTCACCTCTCCTCTCATCGCCACTCTCTGAGTGTCAGAATGAGTTTAGACTCGTCTCGCTCAGCTAATTCTAAACGAAGCTTCTCTAATTCAATATCTTCCAACCGTTCCAACGATAGCAGTAGAAAGAACACCAAAAAGAAGAAGACAACCACCAACCAGAAAACCCTAGGCGTTGCCTGGGCCTCAAAGTCAAATTCTCATTCCTCCTCACGAAATTCCGCCTTCTCCGGTTTCGCCAGTTATATGACGGAGAAGAATCGGAAACTACACAACCAGTTTGACGCTGAGGCTTCCGCGTCGTCTTTTAGTGGCTCTACTTCTGGGAGGCCTATATTCAGTGGAGTTTCAATTTTTGTTGATGGTTTCACGGTTCCTTCCAGCCAGGAACTGCGGAGCTACATGCTAAAGTATGGTGGAAGATTTGAGAATTATTTCTCAAGATATCGTGTAACACATATCATCTGCAGTAATCTGCCTGATAGTAAAGTTAAGAACCTCAGAGCCTTCAGTGCAGGGTTGCCAGTGGTGAAACCCACTTGGATTTTAGATTCTGTTGCTGCTAACAGACTGTTAAGCTGGGTGCCTTACGAGCTTGACCAACTAGCTAATAAACAATCAAAACTTTCAGCCTACTTCACATCGAAGAGTAGTAAAATGCCAGAGGATGCTTTGACAAATTCCCTTTGTCAAGTAGTGTCAGATGTTGGAGATTCATCTGTGATGGTTGGCCACTCAGATTCAGAGGATAGACAATCATCCAAAATTGGGAAGATGACTAAACATAGTGGGCAAATCAGTACTACAGCTGATAATATTGTCCCGGAGAATAATCATGCAATTATGATGGAGGAGCTGAACAGTGTTAGAGTTAAGTCCGATGAAGAGGAGCAAGCAGCTGGAAGCAATGCTGCTACAAAAGATGAGAGAAATGTAAAAGGTGAACTTGAACACACTCATGAAGCAGCTTCTACATCTTTTAGTTCTCACTGCTCATATAAGCAGAATGCAAGAGAATTTCCAAGTTCTAAGAAAGTAAACAAAGATAGAAAAGCAACTGCTAATGTGGGACAGGGGAGCTCACGATTACACTTTATAGGAACCTGGCGAAATCGGTATAGAAAGCGTCTTTCCACCTTGTCTTCTGGATTTAACAATGAAAATTCTAATATTAGTGCCTCTAATATTTCTCATAATTCAGTCATTATCCATGTTGACATGGACTGCTTTTTTGTTTCAGTGGTTATCAGGAACCACCCTGAATTGTTGGACCAGCCTGTAGCTGTGTGTCATTCAAGTAATTCAAATGGAACTGCTGAGATTTCCTCTGCAAACTACCCAGCTCGTAGTCATGGTATTAGGGCCGGTATGTTTGTTCGAGATGCCAAGGCTCTTTGTCCCCATCTTGTTATCTGTCCATACAACTTTGAAGCTTACGAGGAAGTAGCTGATCAATTTTACAGTATATTGCACCAGCATTGTGACAAAGTGCAGGCGGTAAGTTGTGATGAAGCATTTTTAGATGTGACAAATTCAGAGGTTGAAGATCCCGACCTTTTAGCTTCATCAATTAGAGAAGAGATCTATAAGACCACTGGATGTACAGCTAGTGCTGGTATAGCAGGAAATATGCTTATGGCTCGTATTGCTACTAGAACTGCAAAACCAAATGGTCAATATCACATAACTAAAGAAAAGGCCTCACTGCAAAAGGACTTTGGTACAAAAACAGGAGAAATGCTGTGGAATTATTGCAGAGGAATTGATAACCGGTTAGTTGGGAGCTTTCAGTACTTGTCTAGGGATTGGCTCACAGTTGAAAGCAAGTCTGTTGGTGCTGATGTAAATTGGGGCGGGCGCACTTTCACTCTGAAGATTAAAAAGAGAAGGAAAGATGCTGATGAGCCTGCAAAGTTTATGGGTTGTGGGGACTGTGAAAATCTGAGTCACTCTGTGACGATTCCTCTTGCTACTGATAATGTGGAAATACTCCAAAGAATTGTAAAGCAGCTGTTTGGATGTTTTTACATAGATGTCAAGGAGATTCGAGGTATTGGCTTGCAAGTTTCCAGACTTGAAAGTGAAGAAGCTTCTAAACAAGGTACAGCAAAATATTCTTTGAAATCATGGCTCACTTCTGGATATGCAAGTGTAGAAAATCAGAAATTTCCTATAGGTTTTAGTAATGATGGAATTAATGCAAAAGCTTTGGTGTTTTCTCTTGCTTCAGATCATGACAAGCAGAGCAGGGATAGCACGTCCAGTCATGCATGTATAGATCTGCGAGAGTCTTCAGTGGAAATGGACATAAAAATACCAAATAATGAAGCTAGAACTGATCCAATTTCAACACCCCCTCCTTTATGTAAACTTGACATGGAAGTTATAAGGAATCTTCCCCCAGATGTATTTTCAGAATTAAATGAAATTTACGGAGGAAAGTTAATTGATTATATTGCTAACAGGACAAACACAAGTGAGAGTTCTAGCCCTTCAGGAAACTCATCTTTGGAGCAAGAAGCAATAAACAATGAAGAGGAACTTCCCTATTCTGAGCCGATTCCCCAAAACAATTTATTATCAACAAATAAGGCAAAGCAGTATGTGTCGGACAATAATGAAGGTGAAGCAGTACCATATCCAGCGTGTGAACCCTGTTTCAAGGTTACACACCATTCTACTTTTGAAAATGATGATTTATTGCCTTCTTCTTTTAGTCAAGTTGATGGTTCAGTGTTTCAACAATTGCCTGAGGATTTGAAAGCTGTCATTGTTGAGCAGCTTCCTGCACACAGGAGGCCAGAGATGTGCTCCAATGTTGTTGTGATCCCTCCTCTTGAAAACAATTCATTGTCAGTAGGCGTTGAAATTTCTGAGAATTCTCCTGGATCTAGTTATCATGACAGTCTATGGGTTGGGAATCCTCCAAACTGGGTTGGGAAGTTTAAAGTTAGCAGTTGCTTAATTTTAAAGAAACTAGCAGAAATGTATTTCAAATCAGGGTTGGCTAGCACATTTTCTTCAGTTTTGCACCAAATTATATCTGAGTTCTTTGAGCCAAATCTGACCCAGCAGTTTTCTGATGAAACTGTTAACATTATGTGTGAGCTACTAAGGCAGTATATCAAAGTGAAGATAGAAAGAGATATTGAAGAGATTTATATTTGTTTTCGGCTTCTGAAAAGACCTAGAGGCTGGAATAGATTAAAAAGAGGTTTGCAGCCAAGTCCCAATTTTTCTTACAAGTATATAATAGTGTATGTCCTTACCTTCAGGTATGCCTTCAGCTTACTTTCACTTTTACCATTGTCTGCTGCTTATCAATCAAACAACACATTCATTAAAACGGGGCAAAAGCAGGCAGGGCACAGGGTTGTGTGTGCTGGGACACCTGAAAAATTTTAG 3411 0.404 MFLHLSSHRHSLSVRMSLDSSRSANSKRSFSNSISSNRSNDSSRKNTKKKKTTTNQKTLGVAWASKSNSHSSSRNSAFSGFASYMTEKNRKLHNQFDAEASASSFSGSTSGRPIFSGVSIFVDGFTVPSSQELRSYMLKYGGRFENYFSRYRVTHIICSNLPDSKVKNLRAFSAGLPVVKPTWILDSVAANRLLSWVPYELDQLANKQSKLSAYFTSKSSKMPEDALTNSLCQVVSDVGDSSVMVGHSDSEDRQSSKIGKMTKHSGQISTTADNIVPENNHAIMMEELNSVRVKSDEEEQAAGSNAATKDERNVKGELEHTHEAASTSFSSHCSYKQNAREFPSSKKVNKDRKATANVGQGSSRLHFIGTWRNRYRKRLSTLSSGFNNENSNISASNISHNSVIIHVDMDCFFVSVVIRNHPELLDQPVAVCHSSNSNGTAEISSANYPARSHGIRAGMFVRDAKALCPHLVICPYNFEAYEEVADQFYSILHQHCDKVQAVSCDEAFLDVTNSEVEDPDLLASSIREEIYKTTGCTASAGIAGNMLMARIATRTAKPNGQYHITKEKASLQKDFGTKTGEMLWNYCRGIDNRLVGSFQYLSRDWLTVESKSVGADVNWGGRTFTLKIKKRRKDADEPAKFMGCGDCENLSHSVTIPLATDNVEILQRIVKQLFGCFYIDVKEIRGIGLQVSRLESEEASKQGTAKYSLKSWLTSGYASVENQKFPIGFSNDGINAKALVFSLASDHDKQSRDSTSSHACIDLRESSVEMDIKIPNNEARTDPISTPPPLCKLDMEVIRNLPPDVFSELNEIYGGKLIDYIANRTNTSESSSPSGNSSLEQEAINNEEELPYSEPIPQNNLLSTNKAKQYVSDNNEGEAVPYPACEPCFKVTHHSTFENDDLLPSSFSQVDGSVFQQLPEDLKAVIVEQLPAHRRPEMCSNVVVIPPLENNSLSVGVEISENSPGSSYHDSLWVGNPPNWVGKFKVSSCLILKKLAEMYFKSGLASTFSSVLHQIISEFFEPNLTQQFSDETVNIMCELLRQYIKVKIERDIEEIYICFRLLKRPRGWNRLKRGLQPSPNFSYKYIIVYVLTFRYAFSLLSLLPLSAAYQSNNTFIKTGQKQAGHRVVCAGTPEKF 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00020 1136 PANTHER DNA REPAIR PROTEIN REV1 16 568 - -
Spst2g00020 1136 MobiDBLite consensus disorder prediction 293 333 - -
Spst2g00020 1136 SUPERFAMILY BRCT domain 69 203 IPR036420 -
Spst2g00020 1136 SUPERFAMILY DNA/RNA polymerases 397 595 IPR043502 -
Spst2g00020 1136 ProSiteProfiles BRCT domain profile. 110 201 IPR001357 -
Spst2g00020 1136 Pfam impB/mucB/samB family 407 553 IPR001126 GO:0006281
Spst2g00020 1136 FunFam DNA repair protein REV1 462 564 - -
Spst2g00020 1136 MobiDBLite consensus disorder prediction 293 322 - -
Spst2g00020 1136 Gene3D - 566 593 - -
Spst2g00020 1136 Gene3D BRCT domain 105 201 IPR036420 -
Spst2g00020 1136 FunFam DNA repair protein REV1 421 475 - -
Spst2g00020 1136 FunFam DNA repair protein REV1 108 202 - -
Spst2g00020 1136 MobiDBLite consensus disorder prediction 13 41 - -
Spst2g00020 1136 Pfam impB/mucB/samB family C-terminal domain 618 701 IPR017961 GO:0003684|GO:0006281
Spst2g00020 1136 SMART BRCT_7 112 191 IPR001357 -
Spst2g00020 1136 ProSiteProfiles UmuC domain profile. 404 575 IPR001126 GO:0006281
Spst2g00020 1136 MobiDBLite consensus disorder prediction 13 75 - -
Spst2g00020 1136 MobiDBLite consensus disorder prediction 245 267 - -
Spst2g00020 1136 CDD BRCT_Rev1 114 201 - -
Spst2g00020 1136 Gene3D - 404 565 IPR043128 -
Spst2g00020 1136 Gene3D - 421 475 - -
Spst2g00020 1136 Pfam BRCT domain, a BRCA1 C-terminus domain 113 199 IPR001357 -
Spst2g00020 1136 MobiDBLite consensus disorder prediction 53 75 - -
Spst2g00020 1136 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 618 692 IPR036775 GO:0003684|GO:0006281
Spst2g00020 1136 Gene3D - 615 702 IPR036775 GO:0003684|GO:0006281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00020 K03515 - gmx:100778409 1506.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00020 2 245493 263132 Spst2g00020 2 245493 263132 ECH