Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00014 ATGTCGATTTCGGGCATCCAGGGTCAACCTCTGGAGGTTACGGTGGTGTCGTGCTCCAAGTTGAAGGACACGGAATGGATTTCAAGGCAAGATCCGTATGTTTGTGTTGAATATGGGAGCACTAAGTTCCGAACCAGAACCTGCACAGACGGCGGAAAAAACCCCGTTTTCCAAGAGAAGTTCGTCTTTCCCCTCATCGAAGGCCTTCGGGAGCTCAATGTCCTTGTTTGGAACAGCAACACTCTCACCTTCGACGATTTTATCGGAAGCGGAAAGATTCAATTGCACAAGGTTCTCTCTCAAGGTTTCGACGACTCTGCTTGGCCACTTCAGACCAAATCTGGCAGATACTCTGGTGAAGTAAAAGTCATTTTGCATTATGCAATTGCAAATCAAAGGCAGAAATCAGGTTCAACCCATGCTCCTTCTGCACCTCCCTATGTGCCAACAGCAACTCCTCCACCCCTTTCTTTGTATTCTGCTCCGCCTGCCGCTTCCTACCCACCTCCTCCATCTGCTACTTCCTCCTATCCACCACATCTCTCTGCAACTCCTTACCATACAACTGGATCATACCCATCAGTACCATCCACGGCCCCATACCCACCACCTCCCACAGCTTACCCACCCTATCCCTCACATTCATCTCCCTATCCACAGCCCTCATACCCTGCATCATCTCCCTATCCACCCTCCTCATATCCTCCTCCCCCCTCTTATCCCCCTGCTTCAGCTTATCCACCACCTCCATATCCACCGCCTGCAGGTTATTCTCCTGGAATATACCCTCCACCGCCATACTGA 804 0.5075 MSISGIQGQPLEVTVVSCSKLKDTEWISRQDPYVCVEYGSTKFRTRTCTDGGKNPVFQEKFVFPLIEGLRELNVLVWNSNTLTFDDFIGSGKIQLHKVLSQGFDDSAWPLQTKSGRYSGEVKVILHYAIANQRQKSGSTHAPSAPPYVPTATPPPLSLYSAPPAASYPPPPSATSSYPPHLSATPYHTTGSYPSVPSTAPYPPPPTAYPPYPSHSSPYPQPSYPASSPYPPSSYPPPPSYPPASAYPPPPYPPPAGYSPGIYPPPPY 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00014 267 MobiDBLite consensus disorder prediction 159 176 - -
Spst2g00014 267 PRINTS Proline rich extensin signature 192 209 - -
Spst2g00014 267 PRINTS Proline rich extensin signature 142 163 - -
Spst2g00014 267 PRINTS Proline rich extensin signature 163 179 - -
Spst2g00014 267 PRINTS Proline rich extensin signature 210 235 - -
Spst2g00014 267 PANTHER CONSERVED SERINE PROLINE-RICH PROTEIN (AFU_ORTHOLOGUE AFUA_2G01790) 4 267 - -
Spst2g00014 267 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 9 127 IPR035892 -
Spst2g00014 267 MobiDBLite consensus disorder prediction 177 195 - -
Spst2g00014 267 Gene3D C2 domain 9 128 IPR035892 -
Spst2g00014 267 MobiDBLite consensus disorder prediction 196 237 - -
Spst2g00014 267 CDD C2 11 108 - -
Spst2g00014 267 ProSiteProfiles C2 domain profile. 1 109 IPR000008 -
Spst2g00014 267 SMART C2_3c 10 107 IPR000008 -
Spst2g00014 267 MobiDBLite consensus disorder prediction 159 237 - -
Spst2g00014 267 Pfam C2 domain 11 101 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00014 Spst-Chr2 199801 201218 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00014 - - vra:106777522 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00014 2 199801 201218 Spst2g00014 2 199801 201218 ECH