Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03730 GATATGGACGATGAAAATGCTTCAAATATCAATCATAAAAGAGTTTTGGTCTGCACAATGTTCTACAAGTTAGCAAGCCCCAAAAAGGTACATAATTGCATCGACTGGAGCTTGTCATTAGCTTTGCTTACTCATTCTGCTGAACATTCTCAGTCTTATATCTACGTCCAAATCCAAATCGACCTTGTTGTGTCAACCTGTGTGAAGAAAAGATTCGAACACTTTCACGTCTTTTTGTGGAGAGCAACGTCAGCAACAGCTGTGCAGCTGTACCAGCAAGTTCCAATGGAAAAAGATGTAAAAGCTGAGACACAGAAGATGAGAGAGATCATTAGCATTCATATTGGACAAGCTGGAATTCAGGTAGGGAATTCATGTTGGGAGCTGTATTGCCTTGAGCATGGAATTAACCCTGACGGCACGATGCCTAGTGATACTTCAGTTGGCGTTGCACATGATGCTTTCAACACCTTCTTCAGCGAGACTGGATCCGGCAAGCATGTGCCAAGGGCTTTATTTGTTGATCTTGAGCCTAGTGTTATTGATGAAGTAAGAAGTGGTAGTTACAGACAACTCTTTCACCCTGAGCAATTAATCTCAGGCAAGGAAGATGCTGCTAATAACTTTGCAAGAGGACACTACACTGTTGGAAGAGAAATTGTTGAACTATGCCTTGATCGTATCAGAAAGTTAGCAGACAATTGCACTGGCTTGCAAGGATTCTTGGTTTTTAATGCTGTTGGTGGTGGTACTGGTTCTGGTTTGGGATCATTACTGTTGGAACGTTTGTCTGTGGATTATGGGAAGAAATCTAAACTTGGCTTTACCATCTATCCTTCTCCTCAGGTATCTACTGCAGTTGTTGAACCTTACAACAGTGTCCTTTCCACTCATTCTCTTCTTGAGCACACTGATGTGGTTGTGCTTCTGGACAATGAAGCAATATATGATATCTGCAGAAAATCGTTAGATATAGAAAGGCCAACTTACACTAACTTGAACCGTCTGATATCTCAAATTATCTCTTCCTTGACCACTTCCTTGAGATTTGATGGTGCAATTAATGTGGACATTACAGAGTTTCAGACTAATCTTGTGCCATATCCCCGGATACATTTCATGCTTTCATCTTATGCCCCTGTAATATCAGCCGCAAAGGCCTACCACGAGCAGCTATCAGTTCCTGAGATCACTAGTGCTGTTTTTGAGCCATCAAGTATGATGGCTAAGTGTGATCCAAGACATGGCAAGTACATGGCATGCTGCCTGATGTATCGCGGAGACGTTGTTCCCAAAGATGTAAATGCATCTGTTTCAAATATCAAGGCAAAGAGAACAGTTCAGTTTGTTGACTGGGTGATTTTGGTGGCAAATTTTAGGTGCCCTACTGGTTTCAAGTGTGGTATCAACTACCAGCCTCCAACAGTGGTACCAGGAGGTGATCTTGCCAAGGTGCAGCGAGCGGTTTGTATGATAAGCAACAACACAGCTGTTGCTGAGGTTTTCTCGCGCATTGATTACAAATTTGACCTCATGTATGCTAAGAGGGCATTTGTCCACTGGTATGTGGGTGAAGGAATGGAAGAAGGTGAATTCTCTGAAGCCCGGGAAGATCTTGCTGCTCTTGAGAAGGATTATGAAGAGGTTGGAGCAGAAGGTGAAGAAGAAGAAGCTGAGGATG 1681 0.4283 DMDDENASNINHKRVLVCTMFYKLASPKKVHNCIDWSLSLALLTHSAEHSQSYIYVQIQIDLVVSTCVKKRFEHFHVFLWRATSATAVQLYQQVPMEKDVKAETQKMREIISIHIGQAGIQVGNSCWELYCLEHGINPDGTMPSDTSVGVAHDAFNTFFSETGSGKHVPRALFVDLEPSVIDEVRSGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVELCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDICRKSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITSAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNASVSNIKAKRTVQFVDWVILVANFRCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDYKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGEEEEAED 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03730 560 CDD alpha_tubulin 108 546 - -
Spst1g03730 560 FunFam Tubulin alpha chain 375 497 - -
Spst1g03730 560 Gene3D - 375 497 IPR037103 -
Spst1g03730 560 SUPERFAMILY Tubulin C-terminal domain-like 352 549 IPR008280 -
Spst1g03730 560 Coils Coil 532 559 - -
Spst1g03730 560 Gene3D Helix hairpin bin 498 550 IPR023123 -
Spst1g03730 560 Gene3D Tubulin/FtsZ, GTPase domain 107 374 IPR036525 -
Spst1g03730 560 SMART Tubulin_4 155 352 IPR003008 GO:0005525
Spst1g03730 560 SMART Tubulin_C_4 354 507 IPR018316 -
Spst1g03730 560 PRINTS Alpha-tubulin signature 320 332 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Spst1g03730 560 PRINTS Alpha-tubulin signature 427 448 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Spst1g03730 560 PRINTS Alpha-tubulin signature 267 278 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Spst1g03730 560 PRINTS Alpha-tubulin signature 194 207 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Spst1g03730 560 PRINTS Alpha-tubulin signature 380 395 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Spst1g03730 560 PRINTS Alpha-tubulin signature 499 515 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Spst1g03730 560 PRINTS Alpha-tubulin signature 536 552 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Spst1g03730 560 PRINTS Alpha-tubulin signature 474 493 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Spst1g03730 560 PRINTS Alpha-tubulin signature 124 139 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Spst1g03730 560 PRINTS Alpha-tubulin signature 151 164 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Spst1g03730 560 PRINTS Alpha-tubulin signature 226 234 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Spst1g03730 560 PRINTS Alpha-tubulin signature 254 266 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Spst1g03730 560 FunFam Tubulin alpha chain 107 374 - -
Spst1g03730 560 PRINTS Tubulin signature 494 522 IPR000217 GO:0005874|GO:0007017
Spst1g03730 560 PRINTS Tubulin signature 214 238 IPR000217 GO:0005874|GO:0007017
Spst1g03730 560 PRINTS Tubulin signature 201 212 IPR000217 GO:0005874|GO:0007017
Spst1g03730 560 PRINTS Tubulin signature 298 318 IPR000217 GO:0005874|GO:0007017
Spst1g03730 560 PRINTS Tubulin signature 116 136 IPR000217 GO:0005874|GO:0007017
Spst1g03730 560 PRINTS Tubulin signature 240 258 IPR000217 GO:0005874|GO:0007017
Spst1g03730 560 PRINTS Tubulin signature 159 178 IPR000217 GO:0005874|GO:0007017
Spst1g03730 560 PRINTS Tubulin signature 284 297 IPR000217 GO:0005874|GO:0007017
Spst1g03730 560 PRINTS Tubulin signature 259 280 IPR000217 GO:0005874|GO:0007017
Spst1g03730 560 PANTHER TUBULIN 108 552 IPR000217 GO:0005874|GO:0007017
Spst1g03730 560 FunFam Tubulin alpha chain 498 550 - -
Spst1g03730 560 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 248 254 IPR017975 GO:0005525|GO:0005874|GO:0007017
Spst1g03730 560 SUPERFAMILY Tubulin nucleotide-binding domain-like 107 350 IPR036525 -
Spst1g03730 560 Pfam Tubulin/FtsZ family, GTPase domain 109 319 IPR003008 GO:0005525
Spst1g03730 560 Pfam Tubulin C-terminal domain 369 506 IPR018316 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03730 Spst-Chr1 47150794 47157307 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03730 K07374 - gmx:100796371 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03730 1 47150794 47157307 Spst1g03730 1 47150794 47157307 ECH