Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03671 ATGGAAGTAGCTTTTCCCCCTCAAGTACAAAAACCAAATTTGCAGATAACAGGTCGCAAAATTTTATGTGTTGGATCCCAAAAGGATTTGTGGCTTGTTGTAAAAGAAGGATCTCTAAATGATGTAGAGTTGGCCTTGGCATCATTGAAGAAGAGTGGGGGCAATATCAATTTGAGGAACACTTTTGGGTTGACTCCTCTTCACATTGCAACTTGGAGAAACCACATTCCCATTGTAAGGAGGCTTCTTGAAGCTGGTGCTGATCCTGATGCTCGAGATGGAGAATCAGGATGGAGTAGCCTTCACAGGGCTCTGCATTTTGGTCATCTTGCTGCGGCAAGTGTCCTTCTTCAGCACGGTGCCTCTATTACATTGGAGGACTCTAAATCTAGAATACCTGTAGATCTCTTATCTGGCTCTGTATTTCAGGCTCTTGGAAATGAACACAGTTCAGTGGCTACTGAGGTCTTTAGTTGGGGAAGTGGTGCAAATTATCAGCTTGGAACTGGAAATGCACATATTCAGAAGTTACCATGCAAAGTTGATTCACTTGGGGGTTCATTCATAAAGCTAATTTCTGCGGGGAAGTTCCATAGTGTGGCGCTTACTGCTCGTGGAGAAGTGTATACTTGGGGATTTGGAAGGGGTGGCCGTCTAGGGCATCCTGATTTTGATATACACAGTGGTCAAGCTGCTGTCATCACTCCCCGCCAGGTGACTTCTGGTCTGGGTTCCCGCAGAGTGATGGCAATTGCTGCAGCTAAGCATCATACGGTCATTGCTACTCAGGGTGGGGAAGTGTTCACTTGGGGATCTAATAGAGAGGGACAGCTTGGGTACCCTTCTGTTGATACACAACCCACACCTCGTAGAGTATCTTCTTTGAGGTCAAAAATTGTTGCTGTTGCTGCAGCTAACAAACACACTGCTGTAGTTTCTGATTTAGGTGAAGTTTTTACATGGGGTTGTAACAGGGAGGGTCAGCTTGGTTATGGCACCTCAAACTCAGCATCTAATTACACCCCACATGTTGTTGAATCCTTGAAGGGAAAGACTTTGACCAGAGTTTCTGCTGCAAAATATCACACAATTGTATTAGGATCTGATGGAGAGGTATTTACCTGGGGTCATCGACTTGTTACTCCAAAACGTGTAGTAGTTAGTAGGAACTTGAAGAAAAGTGGAAGCACTCCTTTAAAATTTCATCGCAAGGAACGACTTAACGTGGTTTCTATAGCTGCTGGAATGGTACACAGCATGGCTCTTACAGATGATGGTGCATTATTTTATTGGGTCTCCTCGGATCCTGATCTTAGATGCCAACAGTTATATGCTATGTGTGGAAGAAATATGGTTAACATATCTGCTGGAAAGTACTGGACTGCAGCAGTTACAGCTACAGGTGATGTTTACATGTGGGATGGGAAGAAAGGTAAGGAAAAGCCCCTTGTTGCAACTCGGTTGCATGGTGTAAAGAAGGCTACATCAGTTTCGGTTGGTGAAACGCATTTACTAATTGTTGCTTCTCTCTATCATCCTGTCTTCCCTCCCAACGTGATTGAGAATTCTCAGAAACTCAAGTTGAATAACATTGATGATATTGAAGAGTTAAATGAAGACATTTTATTTGAGGATCTGGATTCCAGTAAGATGATATCTAGCGTACAAAATGATACTATGAGGCAGAGATCTATACCCAGCTTAAAAAACCTTTGCGAAAAAGTAGCTGCAGAGTGTTTAGTGGAGCCACGGAATGCTGCACAACTGCTTGAGATTGCCGAGTCTCTCGGAGCGGATGATTTGAAGAAATACTGTGAGTATTCTTCACGAGAGCTATTTGACGTTGATGTTAGGTGGTTTCTTCTAGCATTGCACACACAGTATAATTCTATCATCATGTAA 1902 0.4327 MEVAFPPQVQKPNLQITGRKILCVGSQKDLWLVVKEGSLNDVELALASLKKSGGNINLRNTFGLTPLHIATWRNHIPIVRRLLEAGADPDARDGESGWSSLHRALHFGHLAAASVLLQHGASITLEDSKSRIPVDLLSGSVFQALGNEHSSVATEVFSWGSGANYQLGTGNAHIQKLPCKVDSLGGSFIKLISAGKFHSVALTARGEVYTWGFGRGGRLGHPDFDIHSGQAAVITPRQVTSGLGSRRVMAIAAAKHHTVIATQGGEVFTWGSNREGQLGYPSVDTQPTPRRVSSLRSKIVAVAAANKHTAVVSDLGEVFTWGCNREGQLGYGTSNSASNYTPHVVESLKGKTLTRVSAAKYHTIVLGSDGEVFTWGHRLVTPKRVVVSRNLKKSGSTPLKFHRKERLNVVSIAAGMVHSMALTDDGALFYWVSSDPDLRCQQLYAMCGRNMVNISAGKYWTAAVTATGDVYMWDGKKGKEKPLVATRLHGVKKATSVSVGETHLLIVASLYHPVFPPNVIENSQKLKLNNIDDIEELNEDILFEDLDSSKMISSVQNDTMRQRSIPSLKNLCEKVAAECLVEPRNAAQLLEIAESLGADDLKKYCEYSSRELFDVDVRWFLLALHTQYNSIIM 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03671 633 SUPERFAMILY Ankyrin repeat 39 136 IPR036770 -
Spst1g03671 633 PANTHER BTK-BINDING PROTEIN-RELATED 26 606 - -
Spst1g03671 633 SUPERFAMILY RCC1/BLIP-II 407 507 IPR009091 -
Spst1g03671 633 SUPERFAMILY RCC1/BLIP-II 118 431 IPR009091 -
Spst1g03671 633 ProSiteProfiles Ankyrin repeat profile. 62 94 IPR002110 GO:0005515
Spst1g03671 633 Gene3D - 25 121 IPR036770 -
Spst1g03671 633 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 154 205 IPR000408 -
Spst1g03671 633 ProSiteProfiles Ankyrin repeat region circular profile. 62 93 - -
Spst1g03671 633 PRINTS Chromosome condensation regulator RCC1 signature 302 318 IPR000408 -
Spst1g03671 633 PRINTS Chromosome condensation regulator RCC1 signature 155 171 IPR000408 -
Spst1g03671 633 PRINTS Chromosome condensation regulator RCC1 signature 265 281 IPR000408 -
Spst1g03671 633 PRINTS Chromosome condensation regulator RCC1 signature 415 433 IPR000408 -
Spst1g03671 633 PRINTS Chromosome condensation regulator RCC1 signature 189 202 IPR000408 -
Spst1g03671 633 PRINTS Chromosome condensation regulator RCC1 signature 208 224 IPR000408 -
Spst1g03671 633 PRINTS Chromosome condensation regulator RCC1 signature 318 332 IPR000408 -
Spst1g03671 633 Pfam Regulator of chromosome condensation (RCC1) repeat 155 202 IPR000408 -
Spst1g03671 633 Pfam Regulator of chromosome condensation (RCC1) repeat 206 260 IPR000408 -
Spst1g03671 633 Pfam Regulator of chromosome condensation (RCC1) repeat 265 312 IPR000408 -
Spst1g03671 633 Pfam Regulator of chromosome condensation (RCC1) repeat 316 366 IPR000408 -
Spst1g03671 633 Gene3D - 122 389 IPR009091 -
Spst1g03671 633 Gene3D - 390 510 IPR009091 -
Spst1g03671 633 ProSiteProfiles Ankyrin repeat profile. 96 128 IPR002110 GO:0005515
Spst1g03671 633 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 206 264 IPR000408 -
Spst1g03671 633 Pfam Ankyrin repeats (3 copies) 34 127 IPR002110 GO:0005515
Spst1g03671 633 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 316 369 IPR000408 -
Spst1g03671 633 ProSiteProfiles Ankyrin repeat region circular profile. 96 127 - -
Spst1g03671 633 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 192 202 IPR000408 -
Spst1g03671 633 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 265 315 IPR000408 -
Spst1g03671 633 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 425 IPR000408 -
Spst1g03671 633 SMART ANK_2a 96 125 IPR002110 GO:0005515
Spst1g03671 633 SMART ANK_2a 62 91 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03671 Spst-Chr1 46438271 46443562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03671 51 136 Acyl Lipid Metabolism Gene Families AT5G53470 36.047 1.58e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03671 K24810 - gmx:100814063 1155.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03671 1 46438271 46443562 Spst1g03671 1 46438271 46443562 ECH