Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03670 ATGCAGGCAACTGAGACCAGGACTGTTCAAGTTAAGCAGCTTTCAGATCTAGCTGGTGAGAGAGAGATTCACGAGTTCTTCTCCTTTTCTGGAGAAATTGAGCATGTTGAGATCCTGAGTGAAGATGGGAAATCAAAGACTGCATATGTGACATTTAAAGATCCCAAAGCACTTGAAATTGCATTATTGTTATCGGGAGCAACAATAGTAGACCAAGTTGTGAGGATAACTCCAGCTGAGAACTATGTACCAACTCGTGAGATGCAAGAAGTAAGGGTGGTGGAAAATGCTATAAATGTTGCTCCTTCTGAAAATGTCTCTACAAATGTTGAGGATGGGAAAGCCAGCCCCACCAATAGAAGAGTTTACCTTACTAGAGCACAAGATGCAGTTACAAGTATGCTGGCAAAAGGTTCAGCAATAAGACAGGATGCCGTGAACAAAGCTAAAGCATTTGATGAAAAGCATCAATTGACTGCTAATGCATCTGCAAAGGTCATTTCTTTTGACAAGAGAGTTGGACTGTCAGAGAAATTGACAGTAGGCATTGCTGCAGTGAATCAGAAAGTCAAATCTGTGGATCAGAGGCTTCATGTTTCAGATAAAACAATGGCAGCAATAATGGCAGCTGAGAGGAAGCTGAATGACACTGGATCGGCTGTCAAAACTAGCAGATATGTGACTGCTGGAACAGCATGGTTAAATGGTGCTTTTAGCAAGGTGGCGAAGGCTGGACATGTTGCAAGTACTAAAACTAGAGAAAAATTTAATTTGGCTGTTTCAAACATGACATCAAAGGAACCGTCAGTGGCTGCTGCATAG 822 0.4197 MQATETRTVQVKQLSDLAGEREIHEFFSFSGEIEHVEILSEDGKSKTAYVTFKDPKALEIALLLSGATIVDQVVRITPAENYVPTREMQEVRVVENAINVAPSENVSTNVEDGKASPTNRRVYLTRAQDAVTSMLAKGSAIRQDAVNKAKAFDEKHQLTANASAKVISFDKRVGLSEKLTVGIAAVNQKVKSVDQRLHVSDKTMAAIMAAERKLNDTGSAVKTSRYVTAGTAWLNGAFSKVAKAGHVASTKTREKFNLAVSNMTSKEPSVAAA 273
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03670 273 Gene3D - 1 91 IPR012677 -
Spst1g03670 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 72 IPR000504 GO:0003723
Spst1g03670 273 SUPERFAMILY RNA-binding domain, RBD 4 87 IPR035979 GO:0003676
Spst1g03670 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 81 IPR000504 GO:0003723
Spst1g03670 273 SMART rrm1_1 8 77 IPR000504 GO:0003723
Spst1g03670 273 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 6 257 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Spst1g03670 Spst-Chr1 46406120 46409158 Transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03670 - - gmx:100812446 480.715