Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03658 ATGGACAGGCTCATAAAAGTAGACCCAACAAACACTGTCTCAATAAGGATCGAGCCAGGCCAAAAATGCCACGGCCAAATCACCTTACGCAATGTTATGCACACCATGCCAGTGGCATTCAGGCTTCAACCGTTGATCAAAACGCGTTACACTGTGAAGCCTCAATCTGGAATCATATCCCCATTAGCCACTGTAACCATAGAAATTCTCTACCATCTCCCACAAGGGTCCACTCTCCCTCACTCCTTCCCTCACTCCGAAGGCTCCTTCCTCCTCCACAGCGTGGTGGTTCCCGGCGCCACCGTCAAAGAACCCTCTTCCATGTTCGAATCCGTACCCTCAGACTGGTTCACCGCGAAGAAGAAACAAGTCTTCATCGACAGCGGCATCAAGATAATCTTCGTGGGGTCACTCATTCTCGCGCAGTTAGTCCACGACGGGTCCATAGACGAAATCAGAGAAGCACTTGAACACAGTGAAGCTTCATGGAAAGCCGTTGACTCCGTTGATTCAAACGGCGACCCGCTCCTCCACGTGGCGATTTCCAAAGGCAGACCCGACCTAGTTCAATTACTTCTCGAGTTCAACGCAGACATCGAAGCAAAAGATCGTTCTGGCATGACTCCGTTAGAAAAAGCATGTTCTTTAGGAGAAGAACTAACTGTTGAACTTCTTTTAGCTCACAAGGCCACGACAGAGAGATCGGAAACGTCGTCATTGGGAGCGATTCATTTATCGGCAAGAGAAGGTCACGTGGAAGTTCTGCGTCTGTTGTTACTCAAAGGCGCGAACGTTGACTCGTTGACCAAAGACGGCGAAACCGCGCTGCACCTTGCAGTTAAACATGGTGAGAGAGATTTCGTAAGGATGTTGCTGGCGAACGACGCGAAAACCGACGTTCGGGAGTCGCGAGAGGGTGACACGTGTCTTCACGTAGCGGCGGGACTGGGGGACGAGGCGATGGTGAAGTTTCTGCTGAACAAAGGGGCGAACAAGGACGTGAGGAACTCCGCCGGTAGGACTGCGTATGACGTGGCGGCGGAGAACGGGCACGCCCGAGTGTTCGACGCGCTGGGACTGGGAGACGGGCTGTGCGCGGCGGCGAGGAGGGGGGAGGTGAGGAGCATCCAGCGGCTAATCGAGGGCGGGGCGGTAGTGAACGGAAGGGACCAGAACGGGTGGACGGCTCTGCACAGGGCGTGTTTCAAGGGGAGGGTGGAGGCGGTGAGGGTTTTGTTGGAGAAAGGGAGTGATGTGGACGCGAGGGATGAGGAGGGGTACAGCGCGCTGCACTGCGCAGTTGAGTCGGGGCATGCTGACGTGGCGGAGGTGCTGGTGAAGAAGGGAGTGGATGTTGAGGCGAGGACCAACAAGGGCGTGACGGCGCTGCAGATAGCGGAGGCGTTGGGTTACGTTGGGATTACAAGGGTGCTTCTTAGCGGCGGCGCGGAGAGCGTGGGACACGTGGCAGACGGAGAACAGTATGTGGAGGTGAAGAGGAAGAAGAAGATGGGAAGAAGGAGGGAGAGAGAGATTCGTGGAAGCTTTGATCGGTCAATGGCTTTGGCTGTGCTGTAG 1578 0.552 MDRLIKVDPTNTVSIRIEPGQKCHGQITLRNVMHTMPVAFRLQPLIKTRYTVKPQSGIISPLATVTIEILYHLPQGSTLPHSFPHSEGSFLLHSVVVPGATVKEPSSMFESVPSDWFTAKKKQVFIDSGIKIIFVGSLILAQLVHDGSIDEIREALEHSEASWKAVDSVDSNGDPLLHVAISKGRPDLVQLLLEFNADIEAKDRSGMTPLEKACSLGEELTVELLLAHKATTERSETSSLGAIHLSAREGHVEVLRLLLLKGANVDSLTKDGETALHLAVKHGERDFVRMLLANDAKTDVRESREGDTCLHVAAGLGDEAMVKFLLNKGANKDVRNSAGRTAYDVAAENGHARVFDALGLGDGLCAAARRGEVRSIQRLIEGGAVVNGRDQNGWTALHRACFKGRVEAVRVLLEKGSDVDARDEEGYSALHCAVESGHADVAEVLVKKGVDVEARTNKGVTALQIAEALGYVGITRVLLSGGAESVGHVADGEQYVEVKRKKKMGRRREREIRGSFDRSMALAVL 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03658 525 Gene3D - 236 309 IPR036770 -
Spst1g03658 525 ProSiteProfiles Ankyrin repeat region circular profile. 172 204 - -
Spst1g03658 525 Gene3D - 360 494 IPR036770 -
Spst1g03658 525 ProSiteProfiles Ankyrin repeat profile. 238 270 IPR002110 GO:0005515
Spst1g03658 525 ProSiteProfiles Ankyrin repeat profile. 305 337 IPR002110 GO:0005515
Spst1g03658 525 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Spst1g03658 525 SMART ANK_2a 458 488 IPR002110 GO:0005515
Spst1g03658 525 SMART ANK_2a 271 300 IPR002110 GO:0005515
Spst1g03658 525 SMART ANK_2a 238 267 IPR002110 GO:0005515
Spst1g03658 525 SMART ANK_2a 338 367 IPR002110 GO:0005515
Spst1g03658 525 SMART ANK_2a 172 201 IPR002110 GO:0005515
Spst1g03658 525 SMART ANK_2a 392 421 IPR002110 GO:0005515
Spst1g03658 525 SMART ANK_2a 305 334 IPR002110 GO:0005515
Spst1g03658 525 SMART ANK_2a 425 454 IPR002110 GO:0005515
Spst1g03658 525 SMART ANK_2a 205 234 IPR002110 GO:0005515
Spst1g03658 525 ProSiteProfiles Ankyrin repeat profile. 392 424 IPR002110 GO:0005515
Spst1g03658 525 Pfam Ankyrin repeats (many copies) 302 346 IPR002110 GO:0005515
Spst1g03658 525 ProSiteProfiles Ankyrin repeat region circular profile. 305 336 - -
Spst1g03658 525 ProSiteProfiles Ankyrin repeat profile. 271 303 IPR002110 GO:0005515
Spst1g03658 525 SUPERFAMILY PapD-like 2 149 IPR008962 -
Spst1g03658 525 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 135 IPR000535 -
Spst1g03658 525 SUPERFAMILY Ankyrin repeat 166 485 IPR036770 -
Spst1g03658 525 ProSiteProfiles Ankyrin repeat profile. 425 457 IPR002110 GO:0005515
Spst1g03658 525 ProSiteProfiles Ankyrin repeat region circular profile. 238 266 - -
Spst1g03658 525 Pfam Ankyrin repeats (3 copies) 425 484 IPR002110 GO:0005515
Spst1g03658 525 Pfam Ankyrin repeats (3 copies) 364 423 IPR002110 GO:0005515
Spst1g03658 525 Pfam Ankyrin repeats (3 copies) 242 299 IPR002110 GO:0005515
Spst1g03658 525 Pfam Ankyrin repeats (3 copies) 164 230 IPR002110 GO:0005515
Spst1g03658 525 Pfam MSP (Major sperm protein) domain 5 108 IPR000535 -
Spst1g03658 525 Gene3D Immunoglobulins 1 133 IPR013783 -
Spst1g03658 525 ProSiteProfiles Ankyrin repeat region circular profile. 392 424 - -
Spst1g03658 525 PRINTS Ankyrin repeat signature 408 422 IPR002110 GO:0005515
Spst1g03658 525 PRINTS Ankyrin repeat signature 272 287 IPR002110 GO:0005515
Spst1g03658 525 ProSiteProfiles Ankyrin repeat region circular profile. 425 457 - -
Spst1g03658 525 ProSiteProfiles Ankyrin repeat region circular profile. 271 302 - -
Spst1g03658 525 Gene3D - 134 235 IPR036770 -
Spst1g03658 525 Gene3D - 310 359 IPR036770 -
Spst1g03658 525 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 143 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03658 Spst-Chr1 46273808 46275385 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03658 266 480 Miscellaneous Gene Families AT2G31820 31.933 3.68e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03658 - - gmx:100782232 840.876